Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 9.8e-41 169.9 96 100.0
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 8.9e-18 93.6 72 80.6
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.0e-17 92.4 72 79.2
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 1.4e-15 86.3 72 59.7
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 2.4e-15 85.5 71 63.4
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 3.2e-15 85.1 72 58.3
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 2.7e-14 82.0 94 54.3
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.3e-13 79.7 72 55.6
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 1.3e-13 79.7 70 57.1
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 5.1e-13 77.8 104 49.0
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 6.6e-13 77.4 94 53.2
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 8.6e-13 77.0 93 52.7
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.5e-12 76.3 72 51.4
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.9e-12 75.9 75 50.7
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.5e-12 75.5 72 54.2
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.2e-11 73.2 72 54.2
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.8e-11 72.0 72 50.0
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 3.6e-11 71.6 73 49.3
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 4.7e-11 71.2 72 50.0
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 8.1e-11 70.5 70 51.4
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 1.8e-10 69.3 71 50.7
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.8e-10 69.3 75 50.7
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 2.4e-10 68.9 94 48.9
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 2.4e-10 68.9 94 48.9
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 2.4e-10 68.9 94 48.9
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 3.1e-10 68.6 74 48.6
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 4.0e-10 68.2 70 48.6
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.2e-10 67.8 75 61.3
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 6.8e-10 67.4 72 47.2
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 6.8e-10 67.4 70 55.7
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 8.9e-10 67.0 95 49.5
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 8.9e-10 67.0 95 49.5
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 8.9e-10 67.0 71 50.7
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.2e-09 66.6 74 44.6
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.5e-09 66.2 72 47.2
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.5e-09 66.2 71 49.3
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 2.6e-09 65.5 71 64.8
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 2.6e-09 65.5 71 64.8
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 2.6e-09 65.5 71 64.8
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 2.6e-09 65.5 71 64.8
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 3.4e-09 65.1 69 52.2
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 3.4e-09 65.1 73 50.7
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 3.4e-09 65.1 68 48.5
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 3.4e-09 65.1 72 45.8
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 5.8e-09 64.3 38 76.3
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 5.8e-09 64.3 38 76.3
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 7.6e-09 63.9 73 49.3
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 7.6e-09 63.9 71 47.9
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 1.3e-08 63.2 74 45.9
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.3e-08 63.2 73 47.9
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.3e-08 63.2 73 50.7
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.7e-08 62.8 71 56.3
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 1.7e-08 62.8 94 45.7
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 1.7e-08 62.8 69 50.7
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 1.7e-08 62.8 64 48.4
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.7e-08 62.8 73 47.9
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 2.2e-08 62.4 39 76.9
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 2.2e-08 62.4 39 76.9
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 2.2e-08 62.4 39 76.9
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 2.2e-08 62.4 39 76.9
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 2.9e-08 62.0 38 73.7
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 2.9e-08 62.0 70 48.6
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 3.8e-08 61.6 60 50.0
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 3.8e-08 61.6 71 56.3
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 3.8e-08 61.6 71 56.3
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 3.8e-08 61.6 39 76.9
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 3.8e-08 61.6 73 49.3
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 3.8e-08 61.6 73 50.7
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 4.9e-08 61.2 38 73.7
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 6.4e-08 60.8 73 45.2
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 8.4e-08 60.5 73 46.6
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 1.9e-07 59.3 64 48.4
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 7.1e-07 57.4 38 68.4
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 7.1e-07 57.4 34 76.5
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 7.1e-07 57.4 61 49.2
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 1.2e-06 56.6 63 46.0
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.2e-06 56.6 72 52.8
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.2e-06 56.6 72 52.8
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-06 56.6 70 52.9
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 1.6e-06 56.2 94 42.6
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 1.6e-06 56.2 62 45.2
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-06 56.2 75 48.0
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-06 56.2 75 48.0
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 2.1e-06 55.8 75 48.0
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.7e-06 55.5 70 58.6
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 3.5e-06 55.1 62 43.5
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 3.5e-06 55.1 94 36.2
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 3.5e-06 55.1 72 55.6
A03p43520 Brassica napus HOM05D005842 ORTHO05D007077 4.6e-06 54.7 59 67.8
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 6.0e-06 54.3 68 60.3
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 6.0e-06 54.3 37 67.6
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 7.8e-06 53.9 70 41.4
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 7.8e-06 53.9 94 35.1
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 7.8e-06 53.9 36 66.7


User provided reference genes

Program Settings