Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-191 672.5 358 100.0
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.1e-189 665.6 358 99.2
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 3.2e-185 651.7 359 97.8
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 8.9e-180 633.6 358 93.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-178 629.4 358 93.3
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 4.6e-168 594.7 367 88.6
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 4.5e-163 578.2 367 86.4
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 4.5e-163 578.2 367 86.4
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 3.8e-162 575.1 361 86.1
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 3.8e-162 575.1 361 86.1
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 2.4e-161 572.4 361 86.1
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 3.5e-160 568.5 364 85.7
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 3.5e-160 568.5 364 85.7
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 5.1e-159 564.7 366 86.1
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.9e-158 562.8 363 84.8
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.6e-157 559.7 363 84.6
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.8e-157 558.9 365 84.9
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 4.0e-156 555.1 361 83.9
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 5.3e-148 528.1 349 84.2
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.2e-147 526.9 367 80.4
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.0e-146 523.9 367 80.4
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 4.2e-145 518.5 364 79.1
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 5.1e-143 511.5 362 79.8
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 3.0e-119 432.6 334 74.0
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 5.3e-108 395.2 371 60.4
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.6e-104 383.6 374 58.8
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 6.4e-85 318.5 368 50.5
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 7.0e-84 315.1 378 47.6
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 7.0e-84 315.1 365 48.8
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.6e-83 313.9 378 47.6
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.7e-82 310.5 366 49.7
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.7e-82 310.5 371 51.8
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.3e-82 310.1 363 49.9
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 3.0e-82 309.7 368 48.9
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 3.0e-82 309.7 368 48.9
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 5.0e-82 308.9 371 50.7
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 9.5e-81 304.7 368 50.0
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 9.5e-81 304.7 367 49.6
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-80 304.3 371 50.7
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 2.8e-80 303.1 371 49.1
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.8e-80 303.1 367 50.1
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 4.7e-80 302.4 364 48.9
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.3e-79 300.1 371 48.5
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 4.0e-79 299.3 368 50.0
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.0e-79 299.3 371 48.8
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 4.0e-79 299.3 364 48.9
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 5.2e-79 298.9 370 49.2
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.2e-79 298.9 370 49.2
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.2e-79 298.9 371 48.5
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-78 297.7 371 48.2
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-78 297.4 371 48.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.0e-78 297.0 371 48.5
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.6e-78 296.6 362 49.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 6.4e-77 292.0 320 51.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.1e-76 291.2 379 46.4
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.1e-76 291.2 370 47.3
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.1e-76 291.2 375 46.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 5.4e-76 288.9 371 47.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 5.4e-76 288.9 363 47.1
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 7.0e-76 288.5 329 50.8
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 3.0e-74 283.1 365 47.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.0e-74 283.1 374 46.3
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 5.0e-74 282.3 377 44.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.5e-73 280.8 336 50.3
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.5e-73 280.0 373 47.2
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 3.3e-73 279.6 319 50.8
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.3e-73 279.6 365 45.2
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 4.3e-73 279.3 369 46.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.3e-73 278.5 374 44.4
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.5e-73 278.1 370 46.2
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 9.5e-73 278.1 360 46.1
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.2e-72 277.7 372 45.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.6e-72 277.3 366 47.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-72 276.9 370 45.4
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 6.2e-72 275.4 373 46.6
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.8e-71 273.9 354 46.9
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.3e-71 273.5 365 45.2
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.1e-71 273.1 350 47.4
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.0e-71 272.7 337 47.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 6.8e-71 271.9 408 44.4
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.6e-70 270.0 367 45.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 7.5e-70 268.5 352 44.9
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.7e-69 267.3 365 45.8
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.2e-69 266.9 358 46.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.9e-69 266.5 374 44.9
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.4e-68 264.2 369 43.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.9e-68 263.8 365 43.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.9e-68 263.8 354 45.5
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 4.1e-68 262.7 364 41.8
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 7.1e-68 261.9 364 44.5
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.7e-67 260.0 369 44.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.5e-67 259.6 358 45.0
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 3.5e-67 259.6 352 44.6
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.0e-67 258.8 349 46.1
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.1e-66 255.8 369 43.1
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-65 254.6 364 43.1
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.1e-65 254.6 347 45.8
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 3.3e-65 253.1 364 42.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 4.3e-65 252.7 306 47.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 5.6e-65 252.3 377 42.7
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 8.1e-64 248.4 367 43.9
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 8.1e-64 248.4 372 43.5
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.5e-62 244.2 335 43.3
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.0e-62 243.8 367 42.8
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 3.4e-62 243.0 362 42.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 4.4e-62 242.7 369 44.4
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 9.9e-62 241.5 370 41.6
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.9e-61 240.0 369 43.1
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.4e-60 236.9 344 42.4
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.2e-59 234.6 395 40.0
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.6e-59 234.2 369 42.0
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.9e-58 229.6 365 40.0
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 5.1e-58 229.2 303 44.9
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.6e-56 224.2 370 41.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.1e-56 221.9 326 44.5
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.4e-55 221.1 348 38.8
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.1e-55 219.9 356 37.1
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 4.0e-55 219.5 345 41.7
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 4.0e-55 219.5 317 42.0
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 9.3e-52 208.4 372 39.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.2e-51 208.0 350 40.0
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 7.8e-51 205.3 363 39.7
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.5e-49 201.1 326 39.3
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.1e-47 193.4 344 36.9
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 4.5e-46 189.5 280 41.1
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 7.1e-44 182.2 277 41.2
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.7e-43 180.3 367 39.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 2.3e-42 177.2 332 38.0
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.8e-37 159.8 277 37.2
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.4e-36 157.1 197 44.7
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 3.2e-28 130.2 128 58.6
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 3.9e-26 123.2 130 53.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.3e-24 118.2 375 32.0
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-23 114.4 136 44.9
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.4e-22 110.2 138 42.0
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 4.5e-22 109.8 385 28.8
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-20 104.0 130 43.8
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.6e-19 101.3 125 44.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.2e-16 90.9 254 29.5
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 6.3e-16 89.4 157 39.5
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.4e-15 87.4 355 23.9
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.1e-15 87.0 374 24.6
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.5e-14 84.7 194 32.0
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.0e-13 82.0 385 24.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.8e-13 80.1 100 42.0
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 4.7e-11 73.2 96 44.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.4e-09 65.9 127 32.3
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.7e-08 63.5 232 23.7
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 7.0e-07 59.3 61 45.9


User provided reference genes

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