Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p52710 Brassica napus HOM05D029153 ORTHO05D027067 2.1e-52 208.8 104 100.0
BolC3t17543H Brassica oleracea HOM05D029153 ORTHO05D027067 2.1e-52 208.8 104 100.0
BcaC01g03426 Brassica carinata HOM05D029153 ORTHO05D027067 2.8e-33 145.2 73 100.0
BcaC08g45475 Brassica carinata HOM05D029153 ORTHO05D027067 3.5e-28 128.3 79 86.1
BcaC01g04498 Brassica carinata HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
BcaC09g47679 Brassica carinata HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
A03p32720 Brassica napus HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
C03p39820 Brassica napus HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
BolC1t05925H Brassica oleracea HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
BolC3t16245H Brassica oleracea HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
BraA03t12441Z Brassica rapa HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
Sp3g01040 Schrenkiella parvula HOM05D000084 ORTHO05D012289 7.9e-12 73.9 63 65.1
BNapus_Darmor_BZH_scaffold_113p00090 Brassica napus HOM05D000084 ORTHO05D012289 1.4e-11 73.2 61 67.2
BraA01t04636Z Brassica rapa HOM05D000084 ORTHO05D012289 1.4e-11 73.2 61 67.2
Thhalv10020289m.g Eutrema salsugineum HOM05D000084 ORTHO05D012289 8.8e-11 70.5 61 65.6
CARHR075970 Cardamine hirsuta HOM05D000084 ORTHO05D012289 1.1e-10 70.1 63 61.9
A05p44870 Brassica napus HOM05D000084 ORTHO05D012289 3.3e-10 68.6 66 59.1
BNapus_Darmor_BZH_scaffold_97p00070 Brassica napus HOM05D000084 ORTHO05D012289 3.3e-10 68.6 63 61.9
BraA05t23170Z Brassica rapa HOM05D000084 ORTHO05D012289 3.3e-10 68.6 66 59.1
AL3G11170 Arabidopsis lyrata HOM05D000084 ORTHO05D012289 4.3e-10 68.2 63 60.3
BcaC05g30379 Brassica carinata HOM05D000084 ORTHO05D012289 5.7e-10 67.8 63 60.3
C09p75450 Brassica napus HOM05D000084 ORTHO05D012289 5.7e-10 67.8 63 60.3
BolC5t35114H Brassica oleracea HOM05D000084 ORTHO05D012289 5.7e-10 67.8 63 60.3
BcaC08g47149 Brassica carinata HOM05D022594 ORTHO05D014383 7.4e-10 67.4 80 50.0
Carub.0003s0108 Capsella rubella HOM05D000084 ORTHO05D012289 6.3e-09 64.3 63 57.1
C06p17070 Brassica napus HOM05D004416 ORTHO05D005439 6.9e-08 60.8 33 87.9
BolC6t36905H Brassica oleracea HOM05D004416 ORTHO05D005439 6.9e-08 60.8 33 87.9
AT3G01085 Arabidopsis thaliana HOM05D000084 ORTHO05D012289 1.2e-07 60.1 62 54.8
BcaB07g32423 Brassica carinata HOM05D022594 ORTHO05D091602 1.3e-06 56.6 66 51.5
Aa31LG5G12540 Aethionema arabicum HOM05D000084 ORTHO05D012289 2.9e-06 55.5 62 56.5


User provided reference genes

Program Settings