Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 7.7e-121 437.2 224 100.0
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 7.7e-121 437.2 224 100.0
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 7.7e-121 437.2 224 100.0
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 1.0e-104 383.6 219 91.8
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 2.2e-104 382.5 219 91.3
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 5.2e-85 318.2 247 72.1
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 2.6e-84 315.8 244 73.0
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 2.6e-84 315.8 244 73.0
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 4.9e-83 311.6 254 69.3
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 1.6e-81 306.6 232 74.1
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 5.0e-80 301.6 229 75.5
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 5.0e-80 301.6 229 75.5
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 9.5e-79 297.4 237 72.2
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 9.2e-74 280.8 239 67.8
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 3.6e-70 268.9 253 62.5
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 2.6e-68 262.7 248 60.1
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 1.7e-67 260.0 243 62.6
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 8.6e-64 247.7 252 57.9
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 1.3e-32 144.1 158 51.3
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 5.1e-32 142.1 104 65.4
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 8.7e-32 141.4 99 69.7
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 1.5e-31 140.6 98 68.4
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 1.6e-30 137.1 118 61.0
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 2.1e-30 136.7 110 63.6
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 1.4e-29 134.0 110 60.0
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 1.5e-28 130.6 193 45.6
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 6.5e-27 125.2 107 60.7
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 1.4e-26 124.0 107 60.7
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 4.2e-26 122.5 98 65.3
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 1.2e-25 120.9 107 60.7
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 1.6e-25 120.6 98 64.3
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 2.1e-25 120.2 104 56.7
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 3.5e-25 119.4 110 57.3
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 4.6e-25 119.0 94 64.9
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 6.0e-25 118.6 94 61.7
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 6.0e-25 118.6 94 61.7
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 1.3e-24 117.5 105 53.3
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 1.8e-24 117.1 97 58.8
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 5.1e-24 115.5 115 53.9
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.9e-23 113.6 98 59.2
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 2.5e-23 113.2 98 58.2
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 1.3e-22 110.9 99 54.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.1e-22 110.2 114 53.5
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 4.8e-22 109.0 91 59.3
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 4.8e-22 109.0 91 59.3
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 4.8e-22 109.0 99 53.5
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 8.2e-22 108.2 90 58.9
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 4.1e-21 105.9 98 52.0
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 4.1e-21 105.9 98 55.1
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 4.1e-21 105.9 66 75.8
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 7.6e-20 101.7 83 57.8
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 7.6e-20 101.7 77 62.3
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 1.3e-19 100.9 91 57.1
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.8e-19 99.4 99 51.5
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 5.0e-19 99.0 93 53.8
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 6.5e-19 98.6 75 65.3
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 2.5e-18 96.7 79 60.8
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 2.5e-18 96.7 79 60.8
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 5.5e-18 95.5 106 45.3
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 7.2e-18 95.1 136 39.7
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 1.2e-17 94.4 71 62.0
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.1e-17 93.6 89 53.9
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.7e-17 93.2 96 52.1
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.5e-15 87.4 77 55.8
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 1.6e-14 84.0 105 42.9
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 2.2e-14 83.6 184 33.2
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 2.2e-14 83.6 71 53.5
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 7.7e-12 75.1 76 50.0
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 2.5e-10 70.1 65 53.8
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 6.1e-09 65.5 76 38.2
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 6.1e-09 65.5 76 38.2
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 3.3e-07 59.7 51 54.9


User provided reference genes

Program Settings