Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 1.5e-185 653.3 477 100.0
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 2.0e-179 632.9 477 98.1
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 5.9e-171 604.7 477 95.6
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 5.9e-171 604.7 477 95.6
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 5.0e-154 548.5 478 90.0
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 3.5e-139 499.2 475 82.1
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 7.8e-139 498.0 477 83.6
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 6.6e-138 495.0 478 83.3
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 3.3e-137 492.7 475 83.2
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 4.0e-135 485.7 477 82.6
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 6.4e-133 478.4 460 84.1
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 9.2e-132 474.6 460 83.9
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 9.2e-132 474.6 460 83.9
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 9.6e-129 464.5 478 80.1
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 3.2e-124 449.5 478 79.3
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 1.3e-93 347.8 477 52.8
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.3e-90 337.8 213 82.2
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 1.1e-63 248.4 460 53.5
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 5.9e-62 242.7 464 58.4
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.9e-60 237.7 464 47.2
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 3.2e-60 236.9 461 43.4
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 5.2e-58 229.6 465 55.9
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 2.0e-57 227.6 466 56.7
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 1.1e-55 221.9 461 52.9
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 1.4e-55 221.5 479 50.7
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 1.4e-55 221.5 463 57.2
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 3.1e-55 220.3 465 56.3
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 5.9e-54 216.1 463 51.4
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 7.7e-54 215.7 339 58.1
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 6.5e-53 212.6 478 55.2
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 8.6e-53 212.2 459 44.4
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 8.6e-53 212.2 458 53.1
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 1.1e-52 211.8 446 56.1
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.5e-52 211.5 463 39.3
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.9e-52 211.1 474 57.4
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.9e-52 211.1 461 58.4
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 1.6e-51 208.0 469 53.1
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 2.8e-51 207.2 458 52.8
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 6.1e-51 206.1 480 53.1
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 8.0e-51 205.7 449 55.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.4e-50 204.9 466 57.5
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 5.2e-50 203.0 458 52.2
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.5e-49 201.4 463 56.2
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 4.4e-49 199.9 449 55.7
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 3.7e-48 196.8 471 55.2
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 2.4e-47 194.1 449 57.0
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 5.4e-47 193.0 460 47.8
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 5.4e-47 193.0 476 54.6
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 4.5e-46 189.9 462 57.4
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.0e-45 188.7 457 56.9
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.7e-45 188.0 351 54.7
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.3e-45 187.6 466 49.4
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 2.3e-45 187.6 463 56.2
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 3.8e-45 186.8 347 51.0
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 6.6e-45 186.0 478 54.6
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 5.6e-44 183.0 459 43.8
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 6.1e-43 179.5 453 55.4
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.0e-42 178.7 468 44.2
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 4.0e-42 176.8 348 51.1
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 8.9e-42 175.6 468 30.8
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 1.1e-39 168.7 359 61.8
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 4.1e-39 166.8 475 54.9
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.0e-37 162.2 465 53.8
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 8.6e-37 159.1 478 47.1
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.1e-36 158.7 463 39.1
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 8.0e-35 152.5 450 42.4
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 8.0e-35 152.5 347 50.1
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.4e-34 151.8 456 54.4
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.8e-34 151.4 350 47.7
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.3e-34 151.0 352 46.9
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 3.1e-34 150.6 347 49.6
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 4.0e-34 150.2 454 52.9
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 2.2e-32 144.4 208 41.8
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 8.3e-32 142.5 361 46.3
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 8.3e-32 142.5 445 29.4
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 4.6e-30 136.7 341 47.8
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.3e-28 130.6 191 41.9
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 2.1e-27 127.9 429 54.8
C04p21250 Brassica napus HOM05D007725 ORTHO05D009774 7.1e-23 112.8 104 58.7
BcaC02g11621 Brassica carinata HOM05D007725 ORTHO05D009774 1.8e-18 98.2 66 77.3
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 4.0e-18 97.1 175 36.6
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 7.6e-17 92.8 68 66.2
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.7e-16 91.7 50 90.0
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 2.4e-15 87.8 67 64.2
BcaB06g26090 Brassica carinata HOM05D007725 ORTHO05D009774 3.8e-08 63.9 37 86.5


User provided reference genes

Program Settings