Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 7.8e-94 347.1 168 100.0
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 9.3e-87 323.6 159 98.1
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 4.3e-76 288.1 145 95.2
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 4.6e-70 268.1 135 94.8
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-63 246.5 127 94.5
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-51 206.1 113 86.7
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.2e-51 206.1 113 86.7
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 3.7e-51 205.3 113 86.7
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-50 203.8 113 85.8
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.1e-50 203.8 113 85.8
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.4e-50 203.4 113 85.8
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 4.7e-46 188.3 110 81.8
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.3e-45 186.0 128 69.5
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.0e-45 185.7 128 70.3
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 6.7e-45 184.5 113 77.9
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.6e-41 173.3 128 65.6
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.0e-40 170.6 144 59.7
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.9e-40 169.1 110 73.6
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 7.2e-39 164.5 113 69.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 2.3e-37 159.5 125 64.0
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 6.7e-37 157.9 110 69.1
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.8e-37 157.5 117 67.5
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 8.8e-37 157.5 110 69.1
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-36 157.1 110 67.3
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-36 157.1 110 68.2
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-36 156.8 110 68.2
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.5e-36 156.8 110 68.2
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.3e-35 153.7 110 69.1
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.2e-35 152.9 110 67.3
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.2e-35 152.9 123 64.2
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 4.8e-35 151.8 110 65.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.2e-35 151.0 110 64.5
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-34 149.4 110 64.5
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-34 149.4 110 64.5
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 2.0e-33 146.4 80 87.5
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.8e-32 142.1 110 65.5
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 5.5e-31 138.3 128 55.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.1e-30 136.3 97 69.1
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-29 132.9 125 54.4
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.3e-29 132.9 129 54.3
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.3e-29 132.9 122 54.9
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.3e-29 132.9 131 48.9
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.0e-29 132.5 77 84.4
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 3.0e-29 132.5 113 55.8
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 4.0e-29 132.1 118 53.4
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 8.8e-29 131.0 118 52.5
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.2e-28 130.6 110 57.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.2e-28 130.6 122 50.8
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 2.0e-28 129.8 118 56.8
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 2.0e-28 129.8 117 51.3
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.6e-28 129.4 110 56.4
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.4e-28 129.0 111 52.3
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 4.4e-28 128.6 122 52.5
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.7e-28 128.3 111 51.4
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.5e-28 127.9 110 55.5
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.5e-28 127.9 110 55.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 9.8e-28 127.5 124 50.0
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 9.8e-28 127.5 110 53.6
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 9.8e-28 127.5 110 55.5
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.3e-27 127.1 110 52.7
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.2e-27 126.3 117 54.7
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 2.8e-27 125.9 110 52.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 3.7e-27 125.6 110 52.7
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.7e-27 125.6 110 54.5
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 3.7e-27 125.6 117 51.3
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 4.8e-27 125.2 111 52.3
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 8.3e-27 124.4 110 51.8
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 8.3e-27 124.4 128 48.4
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.4e-26 123.6 125 45.6
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.8e-26 123.2 110 51.8
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.8e-26 123.2 117 50.4
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.4e-26 122.9 110 50.9
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.1e-26 122.5 110 50.9
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.1e-26 122.5 110 50.9
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.1e-26 122.5 110 50.9
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 4.1e-26 122.1 110 52.7
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 4.1e-26 122.1 110 52.7
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 4.1e-26 122.1 110 50.0
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 5.4e-26 121.7 111 49.5
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 7.0e-26 121.3 123 46.3
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 7.0e-26 121.3 111 51.4
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.2e-25 120.6 110 51.8
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.6e-25 120.2 117 49.6
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.6e-25 120.2 110 48.2
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.6e-25 120.2 111 51.4
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 2.0e-25 119.8 119 48.7
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.5e-25 119.0 117 47.9
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 4.5e-25 118.6 110 50.9
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 4.5e-25 118.6 117 47.9
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 7.7e-25 117.9 110 50.9
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.0e-24 117.5 113 50.4
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.3e-24 117.1 110 49.1
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.3e-24 117.1 131 47.3
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.3e-24 117.1 131 47.3
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.3e-24 117.1 117 50.4
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.7e-24 116.7 111 48.6
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.9e-24 115.9 123 44.7
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 3.8e-24 115.5 110 49.1
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.0e-24 115.2 113 47.8
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 5.0e-24 115.2 113 48.7
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 5.0e-24 115.2 110 48.2
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.1e-23 114.0 123 43.9
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.1e-23 114.0 117 47.0
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.5e-23 113.6 117 48.7
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.9e-23 113.2 113 48.7
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 3.2e-23 112.5 123 43.9
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 3.2e-23 112.5 113 46.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.2e-23 112.1 117 47.9
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.5e-23 111.7 125 44.8
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.5e-23 111.7 125 44.8
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.6e-22 110.2 110 45.5
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.7e-22 109.4 122 45.1
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.6e-22 109.0 113 43.4
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.6e-22 109.0 113 45.1
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 4.7e-22 108.6 111 47.7
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 4.7e-22 108.6 113 45.1
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 6.1e-22 108.2 121 46.3
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.0e-22 107.8 111 45.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 8.0e-22 107.8 111 46.8
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.0e-21 107.5 111 45.9
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.4e-21 107.1 111 45.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.8e-21 106.7 125 43.2
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 2.3e-21 106.3 110 45.5
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 2.3e-21 106.3 110 44.5
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 3.0e-21 105.9 110 46.4
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 3.0e-21 105.9 111 46.8
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 3.0e-21 105.9 130 44.6
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.0e-21 105.5 111 45.0
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 6.8e-21 104.8 110 42.7
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.2e-20 104.0 113 43.4
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.2e-20 104.0 113 43.4
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.5e-20 103.6 111 45.0
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 4.4e-20 102.1 110 42.7
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 4.4e-20 102.1 110 42.7
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 5.7e-20 101.7 109 46.8
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 5.7e-20 101.7 111 44.1
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.7e-20 101.7 110 42.7
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.3e-19 100.5 88 53.4
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.3e-19 100.5 110 45.5
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 8.3e-19 97.8 110 43.6
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.1e-18 97.4 110 41.8
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 9.2e-18 94.4 111 41.4
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 4.5e-17 92.0 110 44.5
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.0e-16 90.9 115 41.7
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.0e-16 90.9 110 41.8
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.0e-16 88.6 118 35.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 6.6e-16 88.2 109 42.2
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 8.6e-16 87.8 63 68.3
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 8.6e-16 87.8 118 38.1
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.9e-15 86.7 109 38.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.3e-15 85.5 77 53.2
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.3e-15 84.7 118 37.3
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.2e-14 84.0 110 37.3
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 6.1e-14 81.6 113 39.8
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.8e-13 80.1 111 39.6
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.0e-13 79.0 95 42.1
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.6e-12 76.3 111 36.9
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.4e-12 75.9 80 46.2
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.7e-12 75.1 78 46.2
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 2.2e-11 73.2 109 33.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 2.0e-09 66.6 112 35.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 7.8e-09 64.7 110 38.2
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 6.6e-08 61.6 55 52.7
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 2.1e-06 56.6 90 35.6
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 3.6e-06 55.8 58 50.0


User provided reference genes

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