Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-19 97.8 48 100.0
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-19 97.8 48 100.0
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 5.8e-18 93.2 48 95.8
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 7.6e-18 92.8 48 95.8
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 7.6e-10 66.2 32 96.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 3.8e-09 63.9 32 93.8
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 3.8e-09 63.9 32 93.8
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 3.8e-09 63.9 32 93.8
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 8.4e-09 62.8 32 90.6
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.1e-08 62.4 32 90.6
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.9e-08 61.6 32 90.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 2.5e-08 61.2 32 87.5
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.2e-08 60.8 31 90.3
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 3.2e-08 60.8 31 90.3
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 4.2e-08 60.5 32 84.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 9.3e-08 59.3 32 84.4
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 9.3e-08 59.3 32 84.4
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 9.3e-08 59.3 32 84.4
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.6e-07 58.5 32 84.4
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.6e-07 58.5 32 84.4
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.6e-07 58.5 32 84.4
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-07 58.2 31 83.9
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.1e-07 58.2 32 81.2
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.1e-07 58.2 32 81.2
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.1e-07 58.2 32 84.4
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.7e-07 57.8 32 81.2
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.7e-07 57.8 32 81.2
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 3.5e-07 57.4 32 81.2
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.5e-07 57.4 32 84.4
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 7.9e-07 56.2 32 78.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 7.9e-07 56.2 32 81.2
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 7.9e-07 56.2 32 81.2
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 7.9e-07 56.2 32 81.2
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 7.9e-07 56.2 32 78.1
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.0e-06 55.8 32 78.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.0e-06 55.8 32 78.1
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.0e-06 55.8 32 81.2
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.0e-06 55.8 32 81.2
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.0e-06 55.8 32 81.2
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.3e-06 55.5 32 78.1
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-06 55.5 32 78.1
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-06 55.5 32 78.1
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-06 55.5 32 78.1
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.3e-06 55.5 32 78.1
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.8e-06 55.1 32 78.1
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.8e-06 55.1 32 78.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.3e-06 54.7 32 81.2
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 3.0e-06 54.3 32 75.0
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.0e-06 54.3 32 81.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.9e-06 53.9 32 78.1
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 3.9e-06 53.9 32 81.2
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 5.1e-06 53.5 32 75.0
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 5.1e-06 53.5 32 75.0
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 5.1e-06 53.5 32 75.0
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 5.1e-06 53.5 32 75.0
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 6.7e-06 53.1 32 75.0
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.7e-06 53.1 32 75.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 75.0
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 75.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 78.1
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 75.0
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 75.0
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 71.9
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 71.9
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 78.1
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 78.1
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.7e-06 52.8 32 78.1


User provided reference genes

Program Settings