Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-72 275.8 142 100.0
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 3.5e-71 271.6 142 98.6
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 3.9e-70 268.1 142 97.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 5.1e-70 267.7 142 98.6
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.1e-51 206.8 167 68.9
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.8e-51 206.1 167 68.9
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 5.3e-51 204.5 166 68.7
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-50 203.4 166 68.7
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-50 203.4 166 68.7
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-50 203.4 166 68.7
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-50 203.4 166 68.7
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.2e-50 203.4 166 68.7
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-50 202.6 167 67.1
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 2.0e-50 202.6 167 67.1
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 4.5e-50 201.4 166 67.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 4.5e-50 201.4 167 66.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 4.5e-50 201.4 167 66.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 5.0e-49 198.0 166 66.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.9e-48 196.1 166 63.3
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.9e-48 196.1 166 65.1
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 3.2e-48 195.3 166 65.7
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.1e-47 191.0 166 64.5
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.8e-46 189.5 166 63.9
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 3.0e-46 188.7 166 64.5
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.9e-46 188.3 166 63.3
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.1e-46 188.0 167 62.3
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-45 186.8 166 63.9
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.5e-45 186.4 166 63.3
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.0e-45 186.0 166 63.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.0e-45 186.0 166 62.7
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 2.6e-45 185.7 166 62.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.6e-45 185.7 166 62.0
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.6e-45 185.7 166 62.0
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 2.6e-45 185.7 166 63.3
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 4.4e-45 184.9 166 62.0
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 4.4e-45 184.9 166 62.0
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 4.4e-45 184.9 166 62.0
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 4.4e-45 184.9 166 62.0
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 5.7e-45 184.5 166 62.7
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 7.4e-45 184.1 166 61.4
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 7.4e-45 184.1 166 60.2
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 7.4e-45 184.1 166 61.4
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 7.4e-45 184.1 167 61.7
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 7.4e-45 184.1 167 61.7
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 7.4e-45 184.1 167 61.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 9.7e-45 183.7 166 61.4
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 9.7e-45 183.7 166 60.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.7e-45 183.7 166 59.6
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 9.7e-45 183.7 166 62.0
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 9.7e-45 183.7 166 62.0
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.3e-44 183.3 166 60.8
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.3e-44 183.3 166 61.4
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.7e-44 183.0 166 62.0
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.7e-44 183.0 166 62.7
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-44 182.6 166 60.8
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 2.2e-44 182.6 166 60.8
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.2e-44 182.6 165 61.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 2.8e-44 182.2 166 60.2
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 2.8e-44 182.2 166 60.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.8e-44 182.2 166 62.0
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.8e-44 182.2 166 60.8
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.7e-44 181.8 166 60.8
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.7e-44 181.8 166 61.4
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.8e-44 181.4 166 61.4
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 4.8e-44 181.4 166 60.2
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.8e-44 181.4 167 59.9
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 4.8e-44 181.4 166 60.2
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 4.8e-44 181.4 166 60.8
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 4.8e-44 181.4 166 60.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 4.8e-44 181.4 166 60.8
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 6.3e-44 181.0 166 61.4
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 6.3e-44 181.0 166 61.4
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 6.3e-44 181.0 166 60.2
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 6.3e-44 181.0 166 60.8
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.3e-44 181.0 166 60.8
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.1e-43 180.3 166 60.2
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-43 180.3 166 60.2
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-43 180.3 166 60.2
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-43 180.3 166 60.2
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.4e-43 179.9 166 59.6
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.4e-43 179.9 166 60.8
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.4e-43 179.9 166 59.0
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-43 179.9 166 57.8
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.4e-43 179.9 166 60.2
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.4e-43 179.9 166 60.2
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.4e-43 179.9 166 59.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.8e-43 179.5 166 59.0
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.8e-43 179.5 166 59.0
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-43 179.5 166 59.6
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.8e-43 179.5 166 59.6
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.4e-43 179.1 166 57.8
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.4e-43 179.1 166 60.8
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 2.4e-43 179.1 166 59.6
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 3.1e-43 178.7 166 60.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.1e-43 178.7 166 58.4
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.1e-43 178.7 166 58.4
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.1e-43 178.7 166 58.4
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 4.1e-43 178.3 166 59.6
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 4.1e-43 178.3 166 58.4
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.3e-43 177.9 166 60.2
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 5.3e-43 177.9 166 59.0
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 6.9e-43 177.6 166 59.0
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 6.9e-43 177.6 166 59.0
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 6.9e-43 177.6 166 59.0
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 6.9e-43 177.6 166 59.6
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 9.1e-43 177.2 166 58.4
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.2e-42 176.8 166 59.0
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.2e-42 176.8 166 59.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.5e-42 176.4 166 59.6
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.5e-42 176.4 166 59.0
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.0e-42 176.0 166 60.2
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.6e-42 175.6 166 59.0
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 2.6e-42 175.6 166 58.4
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.6e-42 175.6 167 58.7
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.4e-42 175.3 166 57.8
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.5e-42 174.9 166 59.0
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 4.5e-42 174.9 166 57.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 5.9e-42 174.5 167 58.7
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.9e-42 174.5 166 58.4
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 7.7e-42 174.1 166 58.4
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.3e-41 173.3 166 57.2
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.3e-41 173.3 166 56.6
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.7e-41 172.9 166 56.0
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.2e-41 172.6 166 57.2
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 2.2e-41 172.6 166 57.8
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 3.8e-41 171.8 166 57.8
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 5.0e-41 171.4 166 57.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.0e-41 171.4 166 57.8
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.0e-41 171.4 166 58.4
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 5.0e-41 171.4 166 56.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 5.0e-41 171.4 166 56.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-40 170.2 166 56.6
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.1e-40 170.2 166 58.4
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.2e-40 168.7 165 56.4
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 7.2e-40 167.5 166 57.8
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.7e-39 165.6 164 57.9
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.7e-39 164.9 164 54.3
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 7.9e-39 164.1 167 54.5
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.0e-38 163.7 164 54.3
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.0e-38 163.7 164 54.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.4e-38 163.3 166 57.2
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.8e-38 162.9 164 56.7
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.1e-37 160.2 125 68.0
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.2e-36 154.1 121 66.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.5e-32 142.5 125 58.4
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-29 133.7 136 58.1
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 5.7e-29 131.3 166 44.0
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.2e-25 119.4 166 39.2
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.0e-25 118.2 124 54.8
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.5e-24 116.7 99 64.6
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.5e-24 115.9 124 54.0
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.1e-23 112.8 132 44.7
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-22 109.4 142 48.6
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.7e-21 104.8 116 51.7
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.8e-20 102.4 102 49.0
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.1e-19 98.6 129 48.8
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.7e-18 94.4 94 57.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.9e-14 80.9 57 66.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 4.4e-13 78.6 43 95.3
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 7.5e-13 77.8 164 32.3
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.6e-07 58.9 34 91.2
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 6.1e-07 58.2 78 44.9


User provided reference genes

Program Settings