Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 1.4e-37 159.1 76 100.0
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 3.7e-35 151.0 78 96.2
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-28 129.0 86 80.2
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 2.3e-21 105.1 88 67.0
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 2.3e-21 105.1 88 67.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.5e-20 102.4 92 62.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.0e-20 102.1 92 62.0
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.4e-20 100.9 92 60.9
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.4e-20 100.9 92 60.9
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 7.5e-20 100.1 92 60.9
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 9.9e-20 99.8 92 59.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.7e-19 97.8 89 65.2
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 8.3e-19 96.7 92 56.5
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-18 96.3 92 57.6
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.4e-18 95.9 92 56.5
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.4e-18 95.9 92 56.5
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.4e-18 95.9 92 56.5
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.4e-18 95.9 92 56.5
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.4e-18 95.9 92 56.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.4e-18 95.1 92 56.5
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 3.2e-18 94.7 92 56.5
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 3.2e-18 94.7 92 56.5
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 3.2e-18 94.7 92 56.5
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 5.4e-18 94.0 92 56.5
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 5.4e-18 94.0 92 55.4
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 5.4e-18 94.0 92 56.5
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.1e-18 93.6 92 55.4
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.1e-17 92.0 92 55.4
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 4.6e-17 90.9 92 53.3
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 6.0e-17 90.5 117 47.9
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.3e-15 84.7 91 50.5
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.3e-15 84.7 91 50.5
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.2e-14 82.8 91 48.4
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.1e-14 82.0 91 49.5
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.1e-14 82.0 92 50.0
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.1e-14 82.0 92 51.1
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.7e-14 80.9 92 50.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 6.2e-14 80.5 87 51.7
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 8.1e-14 80.1 57 70.2
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 8.1e-14 80.1 92 50.0
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 8.1e-14 80.1 57 70.2
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.1e-13 79.7 57 68.4
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.4e-13 79.3 91 49.5
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.8e-13 79.0 91 49.5
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.4e-13 78.6 91 49.5
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.4e-13 78.6 57 68.4
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.1e-13 78.2 57 68.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.1e-13 78.2 57 68.4
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 3.1e-13 78.2 90 50.0
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 4.0e-13 77.8 58 67.2
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 4.0e-13 77.8 91 48.4
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 5.2e-13 77.4 91 49.5
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 5.2e-13 77.4 92 47.8
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 8.9e-13 76.6 89 49.4
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.2e-12 76.3 57 64.9
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.5e-12 75.9 57 66.7
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.5e-12 75.9 91 48.4
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 1.5e-12 75.9 91 48.4
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.5e-12 75.9 57 64.9
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.5e-12 75.9 91 49.5
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.0e-12 75.5 56 69.6
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.0e-12 75.5 57 63.2
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.0e-12 75.5 57 66.7
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.6e-12 75.1 57 66.7
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.6e-12 75.1 88 51.1
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.6e-12 75.1 88 51.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 2.6e-12 75.1 57 64.9
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.6e-12 75.1 57 64.9
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.6e-12 75.1 57 64.9
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 2.6e-12 75.1 92 48.9
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 3.4e-12 74.7 57 68.4
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 4.4e-12 74.3 57 64.9
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 4.4e-12 74.3 92 47.8
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 4.4e-12 74.3 57 64.9
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 5.8e-12 73.9 57 63.2
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 5.8e-12 73.9 57 63.2
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 5.8e-12 73.9 57 63.2
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 7.6e-12 73.6 57 59.6
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 7.6e-12 73.6 57 63.2
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 7.6e-12 73.6 57 63.2
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 7.6e-12 73.6 92 47.8
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.3e-11 72.8 57 63.2
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.3e-11 72.8 57 63.2
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.3e-11 72.8 57 63.2
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.3e-11 72.8 57 63.2
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.3e-11 72.8 91 46.2
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.7e-11 72.4 57 64.9
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.7e-11 72.4 92 46.7
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.7e-11 72.4 57 63.2
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.7e-11 72.4 57 66.7
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.2e-11 72.0 57 64.9
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 2.2e-11 72.0 88 48.9
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.2e-11 72.0 91 45.1
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 2.9e-11 71.6 92 44.6
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 3.8e-11 71.2 57 63.2
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 3.8e-11 71.2 57 66.7
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 4.9e-11 70.9 91 46.2
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 4.9e-11 70.9 57 57.9
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 8.4e-11 70.1 57 63.2
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.1e-10 69.7 79 50.6
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.1e-10 69.7 91 44.0
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.4e-10 69.3 57 63.2
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.4e-10 69.3 57 63.2
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 1.9e-10 68.9 57 63.2
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.9e-10 68.9 89 48.3
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.9e-10 68.9 57 63.2
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.4e-10 68.6 79 49.4
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 4.1e-10 67.8 57 57.9
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.1e-10 67.8 92 45.7
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 5.4e-10 67.4 57 61.4
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 5.4e-10 67.4 57 59.6
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 7.1e-10 67.0 60 58.3
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.6e-09 65.9 55 63.6
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 3.5e-09 64.7 57 59.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 3.5e-09 64.7 79 48.1
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.5e-09 64.7 57 56.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 4.6e-09 64.3 57 57.9
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 7.8e-09 63.5 57 59.6
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.5e-07 59.3 85 45.9
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.5e-07 59.3 57 54.4
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.5e-07 59.3 57 52.6
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 7.3e-07 57.0 60 50.0
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 7.3e-07 57.0 60 50.0
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 9.6e-07 56.6 57 52.6
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 9.6e-07 56.6 57 54.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-06 55.8 36 63.9
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.1e-06 55.5 60 48.3
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 6.2e-06 53.9 50 56.0
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 8.1e-06 53.5 61 44.3


User provided reference genes

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