Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 0.0e+00 1088.9 579 100.0
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 0.0e+00 1085.1 579 99.7
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 9.6e-309 1062.8 580 98.1
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 6.1e-303 1043.5 579 96.2
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.1e-301 1039.3 580 96.0
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 6.5e-297 1023.5 580 94.5
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.8e-291 1005.4 583 91.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-290 1002.7 583 91.1
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 4.5e-290 1000.7 582 90.9
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.3e-289 999.2 582 90.7
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 3.0e-286 988.0 587 90.5
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 3.0e-286 988.0 582 89.5
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 3.7e-284 981.1 580 89.1
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 9.1e-283 976.5 579 88.9
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.2e-282 976.1 584 89.4
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 7.2e-280 966.8 582 88.7
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 8.0e-279 963.4 583 87.5
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 6.5e-265 917.1 592 83.4
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 3.7e-260 901.4 583 82.3
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.9e-248 862.4 556 81.7
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.2e-247 859.8 593 77.6
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 2.8e-247 858.6 583 78.6
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.2e-245 853.2 586 78.7
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 5.4e-243 844.3 583 77.0
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.4e-243 844.3 581 77.1
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 6.0e-242 840.9 602 75.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 6.0e-242 840.9 581 76.9
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 7.8e-242 840.5 583 77.5
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.3e-241 839.7 535 82.1
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.0e-241 838.6 589 76.2
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 3.9e-241 838.2 582 76.6
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.5e-240 836.3 586 76.8
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.5e-240 836.3 584 76.4
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.5e-240 835.5 584 76.4
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 4.3e-240 834.7 583 76.2
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.3e-240 833.9 588 76.4
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 9.5e-240 833.6 587 76.0
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 3.6e-239 831.6 577 76.4
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 3.6e-239 831.6 577 76.4
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.6e-239 831.6 546 79.7
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 3.6e-239 831.6 571 78.3
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 3.6e-239 831.6 585 75.9
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.7e-239 831.2 584 76.4
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.8e-238 829.3 586 75.4
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 6.8e-238 827.4 551 79.3
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.5e-237 826.2 559 78.5
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.0e-237 825.9 581 75.9
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.6e-237 825.5 587 75.1
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 2.6e-237 825.5 527 81.6
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.6e-237 825.5 561 79.0
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.4e-237 824.7 579 77.0
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.4e-237 824.7 579 77.0
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 7.5e-237 823.9 549 80.3
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 3.7e-236 821.6 490 86.3
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 4.9e-236 821.2 549 79.2
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 4.9e-236 821.2 527 81.2
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.4e-235 819.7 527 81.0
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 2.4e-235 818.9 533 79.9
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.4e-235 818.9 582 75.9
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 5.4e-235 817.8 579 76.2
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 5.4e-235 817.8 623 71.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 5.4e-235 817.8 586 74.4
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 9.2e-235 817.0 586 74.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.2e-234 816.6 533 79.5
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.7e-234 815.5 605 73.9
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.0e-233 813.5 597 72.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.9e-233 811.6 538 80.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 3.9e-233 811.6 557 77.4
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 5.1e-233 811.2 531 81.0
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 5.1e-233 811.2 577 75.7
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 8.6e-233 810.4 526 80.6
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.3e-232 808.5 534 78.8
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.6e-231 806.2 570 75.8
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 4.7e-231 804.7 562 76.0
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.4e-230 803.1 490 83.7
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.8e-230 802.7 547 76.8
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.8e-230 802.7 582 73.7
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.1e-230 802.0 579 73.6
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.2e-230 801.2 543 78.3
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.2e-229 800.0 589 73.5
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.5e-229 799.7 542 78.4
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 3.4e-229 798.5 546 77.1
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 4.4e-229 798.1 528 79.9
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.2e-228 795.8 530 79.1
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 2.9e-228 795.4 516 80.6
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 4.9e-228 794.7 594 71.7
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 8.3e-228 793.9 530 78.1
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.4e-227 792.3 547 78.4
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 7.1e-227 790.8 529 77.5
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 2.7e-226 788.9 588 72.8
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 2.7e-226 788.9 594 70.5
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.3e-225 786.6 617 70.3
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 2.3e-225 785.8 583 74.1
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.4e-222 775.8 528 77.7
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.8e-222 774.2 507 81.9
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.7e-220 769.6 498 80.7
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.7e-220 769.6 490 82.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 2.5e-216 755.7 466 83.7
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 7.6e-213 744.2 554 71.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.4e-211 739.2 486 80.0
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 6.0e-210 734.6 435 86.4
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.7e-209 733.0 583 71.5
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.7e-209 733.0 461 80.5
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 2.0e-205 719.5 437 84.4
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.7e-204 716.5 515 70.9
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.1e-203 713.8 473 78.9
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.0e-201 707.2 583 67.8
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.8e-201 706.4 742 57.1
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 3.0e-201 705.7 437 82.4
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.3e-200 701.8 573 68.4
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 5.6e-200 701.4 435 84.6
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 7.4e-200 701.0 519 69.9
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 6.2e-199 698.0 509 70.9
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.0e-193 680.6 484 71.7
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.1e-192 677.2 541 66.4
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.7e-188 663.3 396 87.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 5.1e-185 651.7 439 77.4
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 9.0e-182 641.0 397 82.6
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.2e-180 636.3 389 84.6
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 6.5e-180 634.8 427 78.5
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.2e-178 630.6 409 78.7
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.1e-178 628.2 418 78.5
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 7.9e-178 627.9 422 76.1
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 7.4e-176 621.3 423 76.4
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 6.3e-175 618.2 419 76.8
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.4e-169 600.5 455 73.2
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 9.4e-163 577.8 316 95.3
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.7e-159 567.0 461 69.0
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.3e-145 520.0 593 54.6
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.2e-143 513.5 443 66.1
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 7.7e-141 505.0 388 71.9
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.7e-135 487.3 352 71.9
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.8e-134 483.8 451 62.7
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 7.8e-133 478.4 299 82.3
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 6.6e-124 448.7 269 84.4
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 4.0e-121 439.5 261 85.8
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.4e-119 432.2 285 78.9
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 4.1e-118 429.5 524 46.2
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 7.8e-117 425.2 324 74.7
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.5e-78 297.4 501 43.3
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.6e-77 293.1 213 68.5
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.5e-72 278.1 578 37.5
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.5e-72 276.6 186 75.8
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 9.7e-67 258.8 313 50.2
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 2.7e-61 240.7 227 61.2
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.0e-56 224.6 140 81.4
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 6.7e-52 209.5 193 56.0
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.1e-49 200.7 232 49.6
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.6e-48 198.4 118 85.6
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 1.0e-44 185.7 126 75.4
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 3.5e-32 144.1 101 81.2
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.3e-31 142.1 94 73.4
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 2.9e-31 141.0 109 73.4
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.0e-31 140.2 94 70.2
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.2e-30 137.5 161 52.2
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.8e-25 121.7 78 80.8
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 3.1e-25 120.9 69 88.4
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 3.3e-22 110.9 71 73.2
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 3.6e-21 107.5 95 58.9
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.7e-21 107.1 70 77.1
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 4.7e-21 107.1 77 72.7
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-18 99.0 61 80.3
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 5.0e-15 87.0 52 86.5
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 2.1e-13 81.6 58 75.9
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.1e-12 79.3 149 36.2
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 7.0e-09 66.6 90 48.9
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.7e-07 62.0 39 79.5
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.5e-06 58.9 45 57.8


User provided reference genes

Program Settings