Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 5.5e-52 207.2 95 100.0
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 5.5e-52 207.2 95 100.0
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-51 204.9 95 97.9
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 2.7e-51 204.9 95 97.9
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-50 202.2 95 97.9
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-45 183.3 95 87.4
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.4e-42 176.0 96 82.3
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.4e-42 176.0 96 82.3
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.9e-42 174.5 95 85.3
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-40 169.1 95 80.0
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-40 169.1 95 80.0
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-40 169.1 95 80.0
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-37 159.8 95 80.0
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 1.0e-37 159.8 95 80.0
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-37 156.8 95 77.9
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-37 156.8 95 78.9
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-37 156.8 95 77.9
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 8.5e-37 156.8 95 78.9
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 8.5e-37 156.8 95 78.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.4e-36 156.0 96 78.1
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 7.2e-36 153.7 96 78.1
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.6e-14 82.8 81 54.3
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.6e-13 77.0 72 48.6
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 8.6e-13 77.0 76 51.3
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-12 76.6 68 51.5
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.1e-12 76.6 68 51.5
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.5e-12 75.5 80 53.8
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-12 75.5 76 51.3
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.5e-12 75.5 76 53.9
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.2e-12 74.7 71 54.9
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.2e-12 74.7 76 51.3
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.2e-12 74.7 76 51.3
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 7.2e-12 73.9 96 47.9
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.2e-12 73.9 96 47.9
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.2e-12 73.9 96 47.9
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.2e-11 73.2 79 51.9
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.6e-11 72.8 96 46.9
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 2.8e-11 72.0 35 88.6
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.8e-11 72.0 80 48.8
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 6.1e-11 70.9 76 48.7
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 6.1e-11 70.9 85 48.2
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.4e-10 69.7 85 45.9
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 47.4
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-10 69.3 78 48.7
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.3e-10 68.9 76 48.7
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.3e-10 68.9 76 48.7
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.3e-10 68.9 76 48.7
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 4.0e-10 68.2 84 39.3
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.0e-10 68.2 77 45.5
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 4.0e-10 68.2 75 46.7
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.2e-10 67.8 73 50.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.8e-10 67.4 87 43.7
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.5e-09 66.2 56 58.9
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.6e-09 65.5 67 47.8
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.6e-09 65.5 80 41.2
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.6e-09 65.5 80 41.2
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.6e-09 65.5 80 41.2
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 2.6e-09 65.5 95 42.1
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 3.4e-09 65.1 74 50.0
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 4.4e-09 64.7 79 41.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.4e-09 64.7 75 45.3
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 5.7e-09 64.3 78 42.3
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 7.5e-09 63.9 41 68.3
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 7.5e-09 63.9 41 68.3
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 7.5e-09 63.9 86 43.0
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 9.8e-09 63.5 56 55.4
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 9.8e-09 63.5 63 50.8
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.3e-08 63.2 66 48.5
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.3e-08 63.2 63 50.8
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.3e-08 63.2 76 47.4
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.7e-08 62.8 76 44.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-08 62.4 70 51.4
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.2e-08 62.4 79 40.5
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.8e-08 62.0 75 44.0
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 4.9e-08 61.2 93 38.7
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 8.3e-08 60.5 80 42.5
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-07 60.1 70 51.4
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-07 60.1 70 51.4
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-07 60.1 55 50.9
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-07 60.1 70 51.4
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.1e-07 60.1 70 51.4
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.1e-07 60.1 70 51.4
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.1e-07 60.1 90 41.1
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.1e-07 60.1 72 47.2
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 1.4e-07 59.7 72 47.2
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-07 59.7 78 41.0
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-07 59.7 66 51.5
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.4e-07 59.7 78 41.0
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.8e-07 59.3 76 40.8
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 2.4e-07 58.9 77 40.3
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 4.1e-07 58.2 56 50.0
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 5.4e-07 57.8 80 37.5
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 5.4e-07 57.8 27 88.9
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 5.4e-07 57.8 27 88.9
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 5.4e-07 57.8 27 88.9
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-07 57.8 63 46.0
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-07 57.8 80 41.2
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.2e-06 56.6 79 39.2
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.6e-06 56.2 73 43.8
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 1.6e-06 56.2 25 92.0
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 2.0e-06 55.8 56 48.2
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-06 55.8 68 44.1
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.0e-06 55.8 66 42.4
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 2.7e-06 55.5 25 92.0
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-06 55.5 36 66.7
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 2.7e-06 55.5 36 66.7
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 2.7e-06 55.5 36 66.7
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.7e-06 55.5 29 79.3
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 2.7e-06 55.5 68 44.1
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 2.7e-06 55.5 72 43.1
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.5e-06 55.1 80 36.2
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.5e-06 55.1 88 39.8
BcaB05g21528 Brassica carinata HOM05D004540 ORTHO05D004852 5.9e-06 54.3 41 61.0
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 5.9e-06 54.3 27 85.2
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 7.8e-06 53.9 75 38.7


User provided reference genes

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