Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 5.3e-100 367.9 206 100.0
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 1.7e-98 362.8 206 98.5
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 1.2e-96 356.7 205 96.1
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 1.2e-91 340.1 207 94.7
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 1.8e-84 316.2 210 80.0
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 1.8e-84 316.2 210 80.0
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 1.8e-84 316.2 210 80.0
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 6.5e-82 307.8 210 79.0
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 1.4e-73 280.0 212 81.6
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 2.3e-71 272.7 212 78.8
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 1.9e-70 269.6 211 78.2
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 8.2e-69 264.2 215 76.7
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 3.4e-67 258.8 210 78.1
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 2.0e-62 243.0 214 74.8
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 6.7e-55 218.0 187 75.4
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 7.2e-49 198.0 181 72.4
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 8.5e-42 174.5 210 54.3
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 6.3e-37 158.3 211 50.7
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 4.1e-36 155.6 216 52.3
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 5.9e-35 151.8 215 50.7
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 1.3e-34 150.6 213 50.7
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 2.9e-34 149.4 217 50.2
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 5.0e-34 148.7 216 56.0
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 6.5e-34 148.3 218 50.9
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 1.5e-33 147.1 210 54.8
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 3.3e-33 146.0 210 56.2
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 9.5e-33 144.4 212 50.5
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 2.8e-32 142.9 218 51.8
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 3.6e-32 142.5 217 47.9
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 1.0e-31 141.0 220 52.7
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.0e-31 141.0 220 50.9
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 3.0e-31 139.4 217 55.8
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 5.2e-31 138.7 207 53.6
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 6.8e-31 138.3 214 52.8
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 6.8e-31 138.3 211 55.9
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 1.2e-30 137.5 221 54.3
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 1.5e-30 137.1 221 45.7
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 1.5e-30 137.1 214 53.3
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.5e-30 137.1 214 53.3
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 2.0e-30 136.7 100 74.0
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.6e-30 136.3 214 49.5
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 2.6e-30 136.3 204 49.5
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 3.4e-30 136.0 216 49.5
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 7.5e-30 134.8 214 53.3
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 9.8e-30 134.4 224 50.4
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 9.8e-30 134.4 213 50.2
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 1.3e-29 134.0 203 54.2
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 1.7e-29 133.7 205 54.6
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 2.2e-29 133.3 211 49.8
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 2.8e-29 132.9 221 52.5
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 3.7e-29 132.5 215 53.0
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 4.9e-29 132.1 208 53.8
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 6.3e-29 131.7 201 45.3
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 6.3e-29 131.7 213 52.1
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 8.3e-29 131.3 205 54.1
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 1.1e-28 131.0 219 50.2
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 1.4e-28 130.6 223 50.2
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 1.8e-28 130.2 215 52.6
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 3.1e-28 129.4 218 51.8
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 4.1e-28 129.0 218 51.8
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 5.4e-28 128.6 222 50.5
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 5.4e-28 128.6 211 53.1
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 5.4e-28 128.6 218 52.3
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 7.0e-28 128.3 210 54.8
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 2.0e-27 126.7 207 50.2
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 2.7e-27 126.3 207 52.2
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 3.5e-27 125.9 202 54.5
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 4.5e-27 125.6 222 50.5
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 4.5e-27 125.6 214 44.9
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 4.5e-27 125.6 222 53.2
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 5.9e-27 125.2 210 51.0
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 1.0e-26 124.4 216 51.4
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 1.0e-26 124.4 206 48.5
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 2.9e-26 122.9 206 52.4
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 2.9e-26 122.9 217 50.7
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 3.8e-26 122.5 196 45.9
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 3.8e-26 122.5 196 45.9
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.8e-26 122.5 214 51.4
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 6.6e-26 121.7 211 51.2
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 6.6e-26 121.7 212 43.9
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 9.5e-25 117.9 208 50.0
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 4.7e-24 115.5 200 44.5
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 4.7e-24 115.5 212 42.0
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 1.2e-22 110.9 197 45.7
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 1.5e-22 110.5 199 42.2
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 8.3e-21 104.8 188 52.7
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 1.8e-20 103.6 208 47.1
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 7.0e-20 101.7 208 43.3
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 1.3e-18 97.4 211 41.2
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 6.2e-16 88.6 96 60.4
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 1.1e-15 87.8 109 52.3
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 1.4e-15 87.4 114 51.8
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 1.8e-15 87.0 186 46.2
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 4.0e-15 85.9 173 41.0
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 1.2e-14 84.3 173 43.9
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 2.0e-14 83.6 206 40.3
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 4.4e-14 82.4 173 39.3
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 5.8e-14 82.0 109 49.5
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 9.8e-14 81.3 190 47.9
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 1.3e-13 80.9 110 50.0
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.7e-13 80.5 91 52.7
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 2.2e-13 80.1 110 50.9
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.9e-12 77.0 221 43.4
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 3.2e-12 76.3 179 40.8
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 3.2e-12 76.3 87 49.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 3.5e-11 72.8 172 37.2
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 4.6e-11 72.4 113 47.8
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.3e-10 70.9 200 33.0
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 1.1e-09 67.8 174 33.9
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.9e-09 67.0 167 34.7
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 3.3e-09 66.2 179 34.1
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 4.3e-09 65.9 169 33.7
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 5.6e-09 65.5 184 35.9
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 9.5e-09 64.7 166 33.7
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.2e-08 64.3 174 40.8
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.6e-08 63.9 162 34.0
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 1.6e-08 63.9 173 34.1
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.8e-08 63.2 169 34.9
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 2.8e-08 63.2 171 34.5
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 4.7e-08 62.4 165 33.3
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.7e-08 62.4 178 32.6
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 4.7e-08 62.4 179 33.5
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 6.2e-08 62.0 180 35.0
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.1e-08 61.6 178 33.1
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 8.1e-08 61.6 173 32.4
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.4e-07 60.8 166 31.9
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 2.3e-07 60.1 70 52.9
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.1e-07 59.7 169 34.3
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 3.1e-07 59.7 174 33.9
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.0e-07 59.3 178 32.6
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 5.2e-07 58.9 168 32.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 5.2e-07 58.9 35 85.7
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 5.2e-07 58.9 174 33.9
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 6.8e-07 58.5 41 70.7
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 6.8e-07 58.5 164 34.1
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.2e-06 57.8 167 34.7
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.5e-06 57.4 167 34.7
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-06 57.4 167 31.7
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-06 57.4 167 31.7
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-06 57.4 167 31.7
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.5e-06 57.4 166 31.3
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.5e-06 57.4 166 31.3
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 1.5e-06 57.4 105 41.9
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 1.5e-06 57.4 35 82.9
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 2.0e-06 57.0 163 34.4
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 2.0e-06 57.0 167 34.1
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 2.0e-06 57.0 170 30.6
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 2.0e-06 57.0 36 75.0
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 2.0e-06 57.0 172 32.6
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.0e-06 57.0 169 30.8
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.0e-06 57.0 173 32.9
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.6e-06 56.6 176 31.2
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 3.4e-06 56.2 180 32.8
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 4.4e-06 55.8 35 80.0
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 5.8e-06 55.5 35 80.0
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 5.8e-06 55.5 38 71.1
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 5.8e-06 55.5 38 71.1
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 5.8e-06 55.5 169 32.5
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 7.5e-06 55.1 36 75.0
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 9.9e-06 54.7 42 66.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 9.9e-06 54.7 179 32.4
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 9.9e-06 54.7 36 80.6
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 9.9e-06 54.7 68 47.1
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 9.9e-06 54.7 133 38.3
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 9.9e-06 54.7 170 35.9
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 9.9e-06 54.7 163 30.7


User provided reference genes

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