Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 3.2e-40 167.9 82 100.0
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 3.2e-40 167.9 82 100.0
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 3.2e-40 167.9 82 100.0
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 9.2e-40 166.4 82 98.8
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-39 165.2 82 98.8
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 2.1e-39 165.2 82 98.8
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 6.6e-38 160.2 81 95.1
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 5.6e-37 157.1 82 92.7
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 4.8e-36 154.1 81 92.6
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 4.8e-36 154.1 81 92.6
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 8.1e-36 153.3 81 91.4
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-35 152.5 81 91.4
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.4e-35 152.5 81 91.4
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 3.1e-35 151.4 83 91.6
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 3.1e-35 151.4 81 92.6
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.3e-35 150.6 85 88.2
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-34 149.4 82 90.2
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.6e-34 148.3 82 89.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.4e-34 147.9 80 90.0
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 9.9e-34 146.4 83 89.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 9.9e-34 146.4 83 89.2
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 9.9e-34 146.4 82 89.0
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.3e-30 135.2 82 84.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.6e-28 127.9 82 79.3
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 8.1e-28 126.7 82 79.3
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-27 126.3 82 78.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-27 126.3 82 78.0
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.1e-27 126.3 82 78.0
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-27 126.3 82 78.0
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.1e-27 126.3 82 79.3
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.8e-27 125.6 82 80.5
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.4e-27 125.2 82 78.0
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 5.3e-27 124.0 80 77.5
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 5.3e-27 124.0 82 76.8
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 6.9e-27 123.6 80 76.2
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 6.9e-27 123.6 80 76.2
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 6.9e-27 123.6 80 76.2
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 9.0e-27 123.2 82 76.8
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 9.0e-27 123.2 82 76.8
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 9.0e-27 123.2 82 76.8
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.2e-26 122.9 82 76.8
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.0e-26 122.1 82 75.6
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.0e-26 122.1 82 75.6
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 2.6e-26 121.7 82 76.8
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 4.6e-23 110.9 86 72.1
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 3.9e-22 107.8 78 70.5
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.7e-17 92.4 82 62.2
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 4.9e-17 90.9 82 59.8
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 4.9e-17 90.9 82 63.4
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 8.4e-17 90.1 82 61.0
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.1e-16 89.7 76 60.5
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 2.5e-16 88.6 82 63.4
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 3.2e-16 88.2 82 56.1
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.5e-16 87.4 82 59.8
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 7.1e-16 87.0 82 63.4
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.1e-15 85.5 82 57.3
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.1e-15 85.5 75 57.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.1e-15 85.5 75 57.3
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 57.3
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 57.3
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 3.5e-15 84.7 82 56.1
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 3.5e-15 84.7 80 56.2
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 4.6e-15 84.3 82 56.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.6e-15 84.3 75 60.0
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 7.9e-15 83.6 83 59.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.9e-15 83.6 75 61.3
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.9e-15 83.6 76 60.5
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 7.9e-15 83.6 76 60.5
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 1.3e-14 82.8 82 54.9
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.8e-14 82.4 76 57.9
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 3.0e-14 81.6 73 61.6
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 3.0e-14 81.6 75 60.0
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 3.0e-14 81.6 75 54.7
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 3.9e-14 81.3 79 58.2
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.9e-14 81.3 83 55.4
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 3.9e-14 81.3 81 60.5
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.9e-14 81.3 75 58.7
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 3.9e-14 81.3 76 57.9
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 5.1e-14 80.9 77 58.4
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.1e-14 80.9 83 59.0
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 5.1e-14 80.9 82 56.1
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 6.7e-14 80.5 76 55.3
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 6.7e-14 80.5 84 54.8
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 6.7e-14 80.5 83 54.2
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 6.7e-14 80.5 76 56.6
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 8.7e-14 80.1 83 59.0
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 8.7e-14 80.1 83 59.0
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 8.7e-14 80.1 81 58.0
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 8.7e-14 80.1 82 58.5
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.1e-13 79.7 82 53.7
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.1e-13 79.7 82 56.1
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.5e-13 79.3 83 53.0
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.5e-13 79.3 83 59.0
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.5e-13 79.3 84 52.4
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.5e-13 79.3 83 57.8
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.9e-13 79.0 79 50.6
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.9e-13 79.0 83 51.8
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.9e-13 79.0 73 56.2
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 2.5e-13 78.6 83 55.4
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.5e-13 78.6 75 57.3
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 3.3e-13 78.2 79 53.2
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 3.3e-13 78.2 84 52.4
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 5.7e-13 77.4 83 53.0
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 7.4e-13 77.0 82 52.4
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 7.4e-13 77.0 81 55.6
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 7.4e-13 77.0 76 51.3
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 9.6e-13 76.6 84 51.2
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 9.6e-13 76.6 82 58.5
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.6e-12 75.9 75 54.7
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 2.1e-12 75.5 77 50.6
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.1e-12 75.5 73 52.1
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 6.2e-12 73.9 82 50.0
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 6.2e-12 73.9 82 52.4
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.8e-11 72.4 76 50.0
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-11 72.4 72 55.6
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.8e-11 72.4 77 49.4
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.4e-11 72.0 85 50.6
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 2.4e-11 72.0 73 52.1
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.1e-11 71.6 82 48.8
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 4.0e-11 71.2 82 51.2
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.2e-10 69.7 73 53.4
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.5e-10 69.3 74 52.7
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.5e-10 69.3 76 52.6
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.6e-10 68.6 83 51.8
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.4e-10 68.2 72 52.8
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.4e-10 68.2 74 52.7
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 4.5e-10 67.8 78 47.4
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.0e-09 66.6 77 45.5
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.7e-09 65.9 74 51.4
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.7e-09 65.9 89 43.8
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.2e-09 65.5 82 46.3
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 5.0e-09 64.3 72 54.2
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 5.0e-09 64.3 75 48.0
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 5.0e-09 64.3 79 46.8
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.4e-09 63.5 78 50.0
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.4e-08 62.8 75 45.3
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.4e-08 62.8 75 44.0
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.4e-08 62.8 82 45.1
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.4e-08 62.8 78 50.0
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.9e-08 62.4 76 44.7
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.9e-08 62.4 73 45.2
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 2.5e-08 62.0 75 45.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 3.2e-08 61.6 73 47.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 3.2e-08 61.6 75 48.0
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 7.9e-07 57.0 63 50.8


User provided reference genes

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