Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p48850 Brassica napus HOM05D002272 ORTHO05D005405 4.7e-120 434.5 212 100.0
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 4.0e-95 351.7 240 77.1
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 8.7e-90 334.0 240 73.8
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 4.3e-89 331.6 240 73.3
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 5.6e-89 331.3 240 73.3
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 5.6e-89 331.3 240 73.3
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 5.6e-89 331.3 240 72.9
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 7.3e-89 330.9 240 73.3
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 7.3e-89 330.9 240 73.3
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 4.8e-88 328.2 240 72.9
BcaC01g03762 Brassica carinata HOM05D002272 ORTHO05D005405 8.1e-88 327.4 240 74.6
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 1.1e-87 327.0 240 72.5
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 1.1e-87 327.0 240 72.5
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 1.4e-87 326.6 240 72.5
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 2.0e-86 322.8 241 72.6
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 2.0e-86 322.8 241 72.6
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 1.4e-84 316.6 240 70.8
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 2.1e-83 312.8 240 71.2
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 3.5e-83 312.0 240 70.8
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 8.7e-82 307.4 240 67.9
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 2.5e-81 305.8 240 67.5
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 9.6e-81 303.9 240 66.2
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 9.6e-81 303.9 240 67.9
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 3.6e-80 302.0 240 67.5
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 3.6e-80 302.0 240 67.5
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 6.2e-80 301.2 240 67.5
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 6.2e-80 301.2 240 67.5
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 6.2e-80 301.2 240 66.2
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 1.1e-79 300.4 240 66.7
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 2.4e-79 299.3 240 66.2
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 3.1e-79 298.9 240 66.7
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 3.1e-79 298.9 240 66.2
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 4.0e-79 298.5 240 66.2
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 4.0e-79 298.5 240 66.7
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 5.3e-79 298.1 240 67.1
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 6.9e-79 297.7 239 65.3
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 9.0e-79 297.4 240 66.2
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 9.0e-79 297.4 240 65.8
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 1.2e-78 297.0 240 66.7
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 1.5e-78 296.6 240 64.6
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 1.5e-78 296.6 240 67.1
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 1.5e-78 296.6 240 66.7
CiPaw.02G069200 Carya illinoinensis HOM05D002272 ORTHO05D005405 2.0e-78 296.2 240 66.2
Cfa015730 Carpinus fangiana HOM05D002272 ORTHO05D005405 2.6e-78 295.8 240 65.8
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 3.4e-78 295.4 240 65.4
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 5.8e-78 294.7 240 64.2
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 5.8e-78 294.7 240 64.6
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 7.6e-78 294.3 230 69.1
Haze_00766 Corylus avellana HOM05D002272 ORTHO05D005405 7.6e-78 294.3 237 66.2
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 7.6e-78 294.3 240 64.6
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 7.6e-78 294.3 240 65.4
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 7.6e-78 294.3 240 65.4
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 7.6e-78 294.3 240 65.4
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 1.3e-77 293.5 240 65.8
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 1.3e-77 293.5 240 64.6
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 2.2e-77 292.7 240 65.4
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 2.2e-77 292.7 240 65.4
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 2.9e-77 292.4 240 65.0
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 2.9e-77 292.4 240 66.2
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 3.8e-77 292.0 219 68.9
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 3.8e-77 292.0 240 64.6
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 3.8e-77 292.0 240 65.8
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 6.4e-77 291.2 240 64.2
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 8.4e-77 290.8 240 64.2
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 8.4e-77 290.8 240 64.2
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 1.1e-76 290.4 240 64.2
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 1.9e-76 289.7 240 64.2
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 4.2e-76 288.5 240 64.6
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 4.2e-76 288.5 236 66.5
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 4.2e-76 288.5 240 62.9
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 5.4e-76 288.1 240 63.3
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 5.4e-76 288.1 240 64.2
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 9.3e-76 287.3 240 64.6
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 9.3e-76 287.3 240 64.2
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.6e-75 286.6 236 66.1
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 2.1e-75 286.2 240 63.8
PSO761G0243 Papaver somniferum HOM05D002272 ORTHO05D005405 2.1e-75 286.2 240 63.8
PGR004G1245 Punica granatum HOM05D002272 ORTHO05D005405 2.1e-75 286.2 241 63.9
Psat1g056160 Pisum sativum HOM05D002272 ORTHO05D005405 2.7e-75 285.8 240 62.9
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 1.0e-74 283.9 239 61.9
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 2.3e-74 282.7 240 63.3
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 2.3e-74 282.7 240 63.8
TPR.G2257 Trifolium pratense HOM05D002272 ORTHO05D005405 3.0e-74 282.3 239 62.8
PSO541G1920 Papaver somniferum HOM05D002272 ORTHO05D005405 3.9e-74 282.0 240 63.3
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 5.1e-74 281.6 235 65.1
TPR.G18850 Trifolium pratense HOM05D002272 ORTHO05D005405 5.1e-74 281.6 239 63.2
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 6.7e-74 281.2 240 62.5
Rhsim04G0248300 Rhododendron simsii HOM05D002272 ORTHO05D005405 6.7e-74 281.2 240 63.3
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 2.5e-73 279.3 241 61.4
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 2.5e-73 279.3 240 62.1
Glyma.13G276300 Glycine max HOM05D002272 ORTHO05D005405 3.3e-73 278.9 240 62.1
TWI75G1791 Tripterygium wilfordii HOM05D002272 ORTHO05D005405 4.3e-73 278.5 240 61.7
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 9.6e-73 277.3 240 62.9
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 9.6e-73 277.3 240 62.5
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 4.8e-72 275.0 229 64.2
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 4.8e-72 275.0 240 60.0
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 6.2e-72 274.6 239 60.7
Sabra10G0001800 Salix brachista HOM05D002272 ORTHO05D005405 6.2e-72 274.6 240 62.9
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 8.1e-72 274.2 240 62.1
Solyc03g117320.4 Solanum lycopersicum HOM05D002272 ORTHO05D005405 8.1e-72 274.2 232 64.2
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 1.1e-71 273.9 240 62.1
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 3.1e-71 272.3 238 60.1
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 6.9e-71 271.2 239 60.3
CDE12G0965 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 9.0e-71 270.8 240 60.0
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 1.2e-70 270.4 240 61.2
Glyma.12G225000 Glycine max HOM05D002272 ORTHO05D005405 5.8e-70 268.1 240 59.6
Aqoxy5G02803 Aquilegia oxysepala HOM05D002272 ORTHO05D005405 1.0e-69 267.3 240 60.4
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 2.9e-69 265.8 240 58.3
CsaV3_3G015540 Cucumis sativus L. HOM05D002272 ORTHO05D005405 8.4e-69 264.2 241 60.6
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 8.4e-69 264.2 293 50.9
Sed0025255 Sechium edule HOM05D002272 ORTHO05D005405 1.9e-68 263.1 240 60.4
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 5.5e-68 261.5 231 61.9
Lalb_Chr04g0247221 Lupinus albus HOM05D002272 ORTHO05D005405 1.6e-67 260.0 240 59.2
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 2.1e-67 259.6 240 58.3
MELO3C006752.2 Cucumis melo HOM05D002272 ORTHO05D005405 2.1e-67 259.6 241 59.3
vmacro08012 Vaccinium macrocarpon HOM05D002272 ORTHO05D005405 3.9e-66 255.4 291 51.9
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 6.7e-66 254.6 248 58.9
VMungo1080G0714 Vigna mungo HOM05D002272 ORTHO05D005405 1.3e-64 250.4 240 57.1
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 2.9e-61 239.2 308 46.8
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 1.4e-60 236.9 236 55.5
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 1.4e-60 236.9 236 55.5
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 1.8e-58 229.9 239 51.0
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 2.9e-53 212.6 220 56.8
Gohir.A02G058500 Gossypium hirsutum HOM05D002272 ORTHO05D005405 8.5e-53 211.1 144 73.6
Zm00001eb333790 Zea mays HOM05D002272 ORTHO05D005405 1.0e-50 204.1 166 63.9
arahy.Tifrunner.gnm1.ann1.VQU8DB Arachis hypogaea HOM05D002272 ORTHO05D005405 3.0e-50 202.6 145 69.7
CBR_g27892 Chara braunii HOM05D002272 ORTHO05D005405 2.5e-49 199.5 237 47.7
CDE01G0206 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 1.4e-47 193.7 131 73.3
Sabra08G0150200 Salix brachista HOM05D002272 ORTHO05D005405 1.8e-47 193.4 207 54.6
Sopen01g021790 Solanum pennellii HOM05D002272 ORTHO05D005405 5.9e-46 188.3 179 58.7
arahy.Tifrunner.gnm1.ann1.IDQN4N Arachis hypogaea HOM05D002272 ORTHO05D005405 9.4e-44 181.0 137 67.2
arahy.Tifrunner.gnm1.ann1.39Z329 Arachis hypogaea HOM05D002272 ORTHO05D005405 3.6e-43 179.1 144 63.2
VMungo0331G0401 Vigna mungo HOM05D002272 ORTHO05D005405 1.5e-41 173.7 144 60.4
BolC3t17166H Brassica oleracea HOM05D002272 ORTHO05D005405 1.1e-39 167.5 81 98.8
PGSC0003DMG401013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 3.1e-39 166.0 109 74.3
Migut.O00895 Erythranthe guttata HOM05D002272 ORTHO05D005405 2.0e-38 163.3 109 72.5
SEGI_07728 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 1.8e-34 150.2 109 67.0
MCO04G432 Micromonas commoda HOM05D002272 ORTHO05D005405 7.0e-31 138.3 207 42.5
Cre01.g022250 Chlamydomonas reinhardtii HOM05D002272 ORTHO05D005405 2.5e-28 129.8 220 37.7
SalBow5G3525 Salvia bowleyana HOM05D002272 ORTHO05D005405 4.2e-28 129.0 92 69.6
PRCOL_00001976 Prasinoderma coloniale HOM05D002272 ORTHO05D005405 1.5e-25 120.6 217 39.6
Hund04488 Selenicereus undatus HOM05D002272 ORTHO05D005405 3.4e-25 119.4 123 56.1
BcaC09g48707 Brassica carinata HOM05D002272 ORTHO05D005405 1.4e-23 114.0 61 90.2
BcaNung06481 Brassica carinata HOM05D002272 ORTHO05D005405 1.4e-23 114.0 61 90.2
C03p48820 Brassica napus HOM05D002272 ORTHO05D005405 1.6e-22 110.5 59 89.8
BolC3t17164H Brassica oleracea HOM05D002272 ORTHO05D005405 1.6e-22 110.5 59 89.8
Oeu037631.1 Olea europaea HOM05D002272 ORTHO05D005405 5.5e-20 102.1 127 48.0
BolC1t04644H Brassica oleracea HOM05D002272 ORTHO05D040789 7.2e-20 101.7 54 87.0
C01p46730 Brassica napus HOM05D002272 ORTHO05D040789 3.6e-19 99.4 53 88.7
Oeu012217.1 Olea europaea HOM05D002272 ORTHO05D005405 6.1e-19 98.6 61 73.8
Medtr2g090370 Medicago truncatula HOM05D002272 ORTHO05D005405 1.4e-18 97.4 60 71.7
CDE01G0715 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 5.2e-18 95.5 61 68.9
PGSC0003DMG402013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 8.8e-18 94.7 59 74.6
SEGI_24146 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 1.5e-12 77.4 57 61.4
Oeu035504.2 Olea europaea HOM05D002272 ORTHO05D005405 4.3e-12 75.9 43 81.4
VMungo0647G2311 Vigna mungo HOM05D002272 ORTHO05D005405 1.6e-11 73.9 48 68.8
MCO03G352 Micromonas commoda HOM05D002272 ORTHO05D007337 4.7e-11 72.4 196 30.6
HPP92_015293 Vanilla planifolia HOM05D002272 ORTHO05D007337 8.0e-11 71.6 146 34.9
HPP92_010022 Vanilla planifolia HOM05D002272 ORTHO05D007337 1.0e-10 71.2 146 34.9
Cre48.g761197 Chlamydomonas reinhardtii HOM05D002272 ORTHO05D007337 1.8e-10 70.5 202 31.7
TWI60G0209 Tripterygium wilfordii HOM05D002272 ORTHO05D007337 3.0e-10 69.7 146 33.6
BcaC02g11409 Brassica carinata HOM05D002272 ORTHO05D019870 8.9e-10 68.2 33 90.9
Pp3c6_28830 Physcomitrium patens HOM05D002272 ORTHO05D007337 1.2e-09 67.8 191 31.4
Pp3c16_1020 Physcomitrium patens HOM05D002272 ORTHO05D007337 4.4e-09 65.9 146 33.6
SalBow5G0929 Salvia bowleyana HOM05D002272 ORTHO05D005405 1.3e-08 64.3 80 50.0
BcaC02g08597 Brassica carinata HOM05D002272 ORTHO05D019870 3.7e-08 62.8 40 67.5
SMO115G0095 Selaginella moellendorffii HOM05D002272 ORTHO05D019870 3.5e-06 56.2 38 63.2


User provided reference genes

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