Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p48510 Brassica napus HOM05D019133 ORTHO05D020186 4.2e-33 144.1 70 100.0
BolC9t58074H Brassica oleracea HOM05D019133 ORTHO05D020186 1.5e-30 135.6 70 94.3
BolC3t17128H Brassica oleracea HOM05D019133 ORTHO05D020186 3.4e-27 124.4 62 98.4
C01p28730 Brassica napus HOM05D019133 ORTHO05D020186 7.7e-27 123.2 62 98.4
C09p52090 Brassica napus HOM05D019133 ORTHO05D020186 3.8e-26 120.9 62 96.8
BolC1t02800H Brassica oleracea HOM05D019133 ORTHO05D020186 5.0e-26 120.6 62 96.8
BcaB05g22113 Brassica carinata HOM05D002523 ORTHO05D002951 6.3e-13 77.0 74 59.5
AL8G29250 Arabidopsis lyrata HOM05D002523 ORTHO05D002951 8.2e-13 76.6 74 58.1
Thhalv10013580m.g Eutrema salsugineum HOM05D002523 ORTHO05D002951 8.2e-13 76.6 74 58.1
Sp6g16150 Schrenkiella parvula HOM05D002523 ORTHO05D002951 8.2e-13 76.6 74 58.1
AT5G54130 Arabidopsis thaliana HOM05D002523 ORTHO05D002951 3.1e-12 74.7 74 56.8
BcaC03g14326 Brassica carinata HOM05D002523 ORTHO05D002951 3.1e-12 74.7 74 56.8
A02p10550 Brassica napus HOM05D002523 ORTHO05D002951 3.1e-12 74.7 74 56.8
C02p17610 Brassica napus HOM05D002523 ORTHO05D002951 3.1e-12 74.7 74 56.8
BolC2t07892H Brassica oleracea HOM05D002523 ORTHO05D002951 3.1e-12 74.7 74 56.8
BraA02t06119Z Brassica rapa HOM05D002523 ORTHO05D002951 3.1e-12 74.7 74 56.8
Aa31LG3G9910 Aethionema arabicum HOM05D002523 ORTHO05D002951 4.1e-12 74.3 74 56.8
Carub.0008s1442 Capsella rubella HOM05D002523 ORTHO05D002951 4.1e-12 74.3 74 55.4
BcaB08g35762 Brassica carinata HOM05D002523 ORTHO05D002951 1.2e-11 72.8 73 56.2
C09p44240 Brassica napus HOM05D002523 ORTHO05D002951 1.2e-11 72.8 73 56.2
BcaC04g20384 Brassica carinata HOM05D002523 ORTHO05D002951 4.5e-11 70.9 73 54.8
A10p11410 Brassica napus HOM05D002523 ORTHO05D002951 4.5e-11 70.9 73 54.8
BolC9t57297H Brassica oleracea HOM05D002523 ORTHO05D002951 4.5e-11 70.9 73 54.8
BraA10t43235Z Brassica rapa HOM05D002523 ORTHO05D002951 4.5e-11 70.9 73 54.8
BraA08t32162Z Brassica rapa HOM05D019133 ORTHO05D020186 5.0e-10 67.4 33 93.9
THA.LOC104825163 Tarenaya hassleriana HOM05D002523 ORTHO05D002951 7.2e-09 63.5 79 45.6
THA.LOC104799939 Tarenaya hassleriana HOM05D002523 ORTHO05D002951 9.4e-09 63.2 81 44.4
MELO3C024866.2 Cucumis melo HOM05D002523 ORTHO05D002951 2.1e-08 62.0 75 45.3
CsaV3_4G008700 Cucumis sativus L. HOM05D002523 ORTHO05D002951 2.1e-08 62.0 74 45.9
Gohir.A11G102500 Gossypium hirsutum HOM05D002523 ORTHO05D002951 8.0e-08 60.1 75 40.0
Gohir.D11G107000 Gossypium hirsutum HOM05D002523 ORTHO05D002951 8.0e-08 60.1 75 40.0
Gorai.007G114600 Gossypium raimondii HOM05D002523 ORTHO05D002951 8.0e-08 60.1 75 40.0
FAN01G3084 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.0e-07 59.7 72 47.2
ClCG07G009670 Citrullus lanatus HOM05D002523 ORTHO05D002951 1.4e-07 59.3 74 43.2
FvH4_7g33080 Fragaria vesca HOM05D002523 ORTHO05D002951 1.4e-07 59.3 72 47.2
FAN03G0988 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.4e-07 59.3 73 46.6
FAN10G1524 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.4e-07 59.3 72 47.2
FAN10G3000 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.4e-07 59.3 72 47.2
Cpa.g.sc3.171 Carica papaya HOM05D002523 ORTHO05D002951 1.8e-07 58.9 78 42.3
Sed0017970 Sechium edule HOM05D002523 ORTHO05D002951 1.8e-07 58.9 74 44.6
TPR.G35917 Trifolium pratense HOM05D002523 ORTHO05D002951 1.8e-07 58.9 75 45.3
GSVIVG01038668001 Vitis vinifera HOM05D002523 ORTHO05D002951 1.8e-07 58.9 79 44.3
Prupe.2G320700 Prunus persica HOM05D002523 ORTHO05D002951 2.3e-07 58.5 77 44.2
Hma1.2p1_0115F.1_g055610 Hydrangea macrophylla HOM05D002523 ORTHO05D002951 3.0e-07 58.2 81 42.0
Psat5g070800 Pisum sativum HOM05D002523 ORTHO05D002951 5.2e-07 57.4 83 43.4
Potri.012G007600 Populus trichocarpa HOM05D002523 ORTHO05D002951 6.7e-07 57.0 75 42.7
QL09p006507 Quercus lobata HOM05D002523 ORTHO05D002951 8.8e-07 56.6 73 49.3
Glyma.04G226800 Glycine max HOM05D002523 ORTHO05D002951 1.2e-06 56.2 77 42.9
Lj1g0021654 Lotus japonicus HOM05D002523 ORTHO05D002951 1.2e-06 56.2 74 44.6
vmacro06458 Vaccinium macrocarpon HOM05D002523 ORTHO05D002951 1.2e-06 56.2 77 42.9
Lalb_Chr08g0239491 Lupinus albus HOM05D002523 ORTHO05D002951 1.5e-06 55.8 75 42.7
RcHm_v2.0_Chr1g0383111 Rosa chinensis HOM05D002523 ORTHO05D002951 1.5e-06 55.8 72 41.7
Sabra15G0002700 Salix brachista HOM05D002523 ORTHO05D002951 1.5e-06 55.8 74 43.2
CSS0049255 Camellia sinensis var. sinensis HOM05D002523 ORTHO05D002951 2.0e-06 55.5 83 45.8
SGA_v2.0_scaffold1362G53926 Striga asiatica HOM05D002523 ORTHO05D002951 2.6e-06 55.1 78 41.0
Glyma.06G138200 Glycine max HOM05D002523 ORTHO05D002951 3.3e-06 54.7 77 42.9
Potri.015G004200 Populus trichocarpa HOM05D002523 ORTHO05D002951 3.3e-06 54.7 76 42.1
Rhsim03G0217100 Rhododendron simsii HOM05D002523 ORTHO05D002951 3.3e-06 54.7 77 45.5
Actinidia18687 Actinidia chinensis HOM05D002523 ORTHO05D002951 4.4e-06 54.3 83 38.6
MD07G1301900 Malus domestica HOM05D002523 ORTHO05D002951 4.4e-06 54.3 77 42.9
SGA_v2.0_scaffold18G08481 Striga asiatica HOM05D002523 ORTHO05D002951 4.4e-06 54.3 74 41.9
CSS0009553 Camellia sinensis var. sinensis HOM05D002523 ORTHO05D002951 5.7e-06 53.9 66 47.0
Ca_16793_v3 Cicer arietinum L. HOM05D002523 ORTHO05D002951 5.7e-06 53.9 83 43.4
Ca_16809_v3 Cicer arietinum L. HOM05D002523 ORTHO05D002951 5.7e-06 53.9 83 43.4
Thecc.03G210800 Theobroma cacao HOM05D002523 ORTHO05D002951 5.7e-06 53.9 78 39.7
TWI39G0415 Tripterygium wilfordii HOM05D002523 ORTHO05D002951 5.7e-06 53.9 80 41.2
Atru.chr12.2471 Acer truncatum HOM05D002523 ORTHO05D002951 7.5e-06 53.5 81 42.0
Actinidia34279 Actinidia chinensis HOM05D002523 ORTHO05D002951 7.5e-06 53.5 80 38.8
Lalb_Chr11g0067501 Lupinus albus HOM05D002523 ORTHO05D002951 7.5e-06 53.5 76 42.1
Nn1g00472 Nelumbo nucifera HOM05D002523 ORTHO05D002951 7.5e-06 53.5 79 38.0
Hund09728 Selenicereus undatus HOM05D002523 ORTHO05D002951 7.5e-06 53.5 74 44.6
Ciclev10020139m.g Citrus clementina HOM05D002523 ORTHO05D002951 9.7e-06 53.1 80 41.2
Hma1.2p1_1867F.1_g305910 Hydrangea macrophylla HOM05D002523 ORTHO05D002951 9.7e-06 53.1 83 41.0


User provided reference genes

Program Settings