Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03838 Brassica carinata HOM05D008709 ORTHO05D011440 1.9e-77 292.4 143 100.0
C03p48080 Brassica napus HOM05D008709 ORTHO05D011440 1.9e-77 292.4 143 100.0
BolC3t17089H Brassica oleracea HOM05D008709 ORTHO05D011440 6.1e-63 244.2 121 100.0
BraA03t13118Z Brassica rapa HOM05D008709 ORTHO05D011440 3.7e-60 235.0 121 96.7
BcaB04g18877 Brassica carinata HOM05D008709 ORTHO05D011440 2.3e-41 172.6 108 81.5
BolC3t21545H Brassica oleracea HOM05D008709 ORTHO05D011440 1.8e-35 152.9 120 68.3
BcaC01g01470 Brassica carinata HOM05D008709 ORTHO05D011440 2.4e-35 152.5 120 68.3
C03p92330 Brassica napus HOM05D008709 ORTHO05D011440 2.4e-35 152.5 120 68.3
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 3.6e-31 138.7 120 59.2
C03p48130 Brassica napus HOM05D008709 ORTHO05D011440 3.6e-31 138.7 120 59.2
BolC3t17093H Brassica oleracea HOM05D008709 ORTHO05D011440 3.6e-31 138.7 120 59.2
BcaB04g18887 Brassica carinata HOM05D008709 ORTHO05D011440 1.2e-29 133.7 126 59.5
AT2G16005 Arabidopsis thaliana HOM05D008709 ORTHO05D011440 7.5e-29 131.0 119 62.2
BraA03t13114Z Brassica rapa HOM05D008709 ORTHO05D011440 1.6e-26 123.2 121 53.7
BcaB04g18876 Brassica carinata HOM05D008709 ORTHO05D011440 4.6e-26 121.7 122 56.6
BcaC01g03839 Brassica carinata HOM05D008709 ORTHO05D011440 5.6e-24 114.8 122 55.7
CARHR091160 Cardamine hirsuta HOM05D008709 ORTHO05D011440 9.5e-24 114.0 117 56.4
BcaB04g18874 Brassica carinata HOM05D008709 ORTHO05D011440 3.4e-21 105.5 128 45.3
BcaC01g03840 Brassica carinata HOM05D008709 ORTHO05D021804 5.8e-21 104.8 125 48.0
BcaC01g03841 Brassica carinata HOM05D008709 ORTHO05D011440 1.3e-20 103.6 130 46.9
BraA03t13112Z Brassica rapa HOM05D008709 ORTHO05D011440 1.3e-20 103.6 125 48.0
BcaB04g18875 Brassica carinata HOM05D008709 ORTHO05D021804 3.7e-20 102.1 125 45.6
CARHR091170 Cardamine hirsuta HOM05D008709 ORTHO05D011440 6.4e-20 101.3 122 50.0
A03p39650 Brassica napus HOM05D008709 ORTHO05D011440 1.9e-19 99.8 127 46.5
A01p38070 Brassica napus HOM05D008709 ORTHO05D024458 4.1e-19 98.6 132 47.0
C01p48280 Brassica napus HOM05D008709 ORTHO05D024458 3.5e-18 95.5 132 47.0
BraA01t03864Z Brassica rapa HOM05D008709 ORTHO05D024458 3.5e-18 95.5 133 45.9
C03p48140 Brassica napus HOM05D008709 ORTHO05D011440 1.3e-17 93.6 81 65.4
BolC1t04791H Brassica oleracea HOM05D008709 ORTHO05D024458 1.3e-17 93.6 132 47.0
BcaC09g48582 Brassica carinata HOM05D008709 ORTHO05D024458 1.7e-17 93.2 132 46.2
BcaB04g18885 Brassica carinata HOM05D008709 ORTHO05D011440 6.6e-17 91.3 82 57.3
BolC3t17085H Brassica oleracea HOM05D008709 ORTHO05D011440 4.3e-16 88.6 119 45.4
CARHR091180 Cardamine hirsuta HOM05D008709 ORTHO05D011440 7.3e-16 87.8 125 47.2
BcaB01g01201 Brassica carinata HOM05D002139 ORTHO05D002264 2.8e-15 85.9 109 50.5
BraA03t13117Z Brassica rapa HOM05D008709 ORTHO05D011440 2.8e-15 85.9 91 56.0
A03p39690 Brassica napus HOM05D008709 ORTHO05D011440 3.6e-15 85.5 91 56.0
A06p22210 Brassica napus HOM05D002139 ORTHO05D002264 4.7e-15 85.1 109 50.5
CARHR152880 Cardamine hirsuta HOM05D002139 ORTHO05D002264 4.7e-15 85.1 109 49.5
BraA06t25309Z Brassica rapa HOM05D002139 ORTHO05D002264 6.2e-15 84.7 109 50.5
A03p39670 Brassica napus HOM05D008709 ORTHO05D011440 1.1e-14 84.0 107 44.9
BcaC01g02081 Brassica carinata HOM05D002139 ORTHO05D002264 2.3e-14 82.8 109 49.5
C03p68780 Brassica napus HOM05D002139 ORTHO05D002264 2.3e-14 82.8 109 49.5
BolC3t19132H Brassica oleracea HOM05D002139 ORTHO05D002264 2.3e-14 82.8 109 49.5
Carub.0005s0985 Capsella rubella HOM05D002139 ORTHO05D002264 4.0e-14 82.0 109 48.6
Sp5g17230 Schrenkiella parvula HOM05D002139 ORTHO05D002264 4.0e-14 82.0 109 47.7
CARHR091150 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.2e-13 80.5 95 45.3
AT3G44100 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 3.4e-13 79.0 109 48.6
AL5G22100 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 5.8e-13 78.2 109 48.6
BraA09t38151Z Brassica rapa HOM05D014281 ORTHO05D027372 5.8e-13 78.2 133 37.6
Thhalv10010794m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 9.9e-13 77.4 118 46.6
CARHR102450 Cardamine hirsuta HOM05D008709 ORTHO05D011440 2.2e-12 76.3 71 62.0
BolC3t17088H Brassica oleracea HOM05D008709 ORTHO05D011440 4.9e-12 75.1 91 52.7
Thhalv10009560m.g Eutrema salsugineum HOM05D008709 ORTHO05D011440 1.1e-11 73.9 81 48.1
C01p25000 Brassica napus HOM05D014281 ORTHO05D027372 1.6e-10 70.1 115 40.9
BolC1t02444H Brassica oleracea HOM05D014281 ORTHO05D027372 1.6e-10 70.1 115 40.9
THA.LOC104810941 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 2.1e-10 69.7 109 43.1
CANSAT54G2328 Cannabis sativa HOM05D002139 ORTHO05D002264 3.0e-09 65.9 97 37.1
C03p48070 Brassica napus HOM05D008709 ORTHO05D011440 5.1e-09 65.1 64 59.4
Potri.006G201400 Populus trichocarpa HOM05D002139 ORTHO05D002264 6.6e-09 64.7 102 35.3
C03p48060 Brassica napus HOM05D008709 ORTHO05D021804 1.1e-08 63.9 88 42.0
BolC3t17087H Brassica oleracea HOM05D008709 ORTHO05D021804 1.1e-08 63.9 88 42.0
AL3G23360 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 2.5e-08 62.8 103 35.9
A03p39680 Brassica napus HOM05D008709 ORTHO05D021804 2.5e-08 62.8 88 42.0
Duzib170G0994 Durio zibethinus HOM05D002139 ORTHO05D002264 5.6e-08 61.6 101 39.6
QL01p019275 Quercus lobata HOM05D002139 ORTHO05D002264 5.6e-08 61.6 137 32.8
CiPaw.09G022200 Carya illinoinensis HOM05D002139 ORTHO05D002264 7.3e-08 61.2 120 35.8
Os03g0788200 Oryza sativa ssp. japonica HOM05D002139 ORTHO05D002264 7.3e-08 61.2 100 39.0
BraA03t13116Z Brassica rapa HOM05D008709 ORTHO05D021804 9.5e-08 60.8 88 40.9
Duzib150G1358 Durio zibethinus HOM05D002139 ORTHO05D002264 9.5e-08 60.8 113 36.3
BcaC06g31532 Brassica carinata HOM05D023624 ORTHO05D032369 1.6e-07 60.1 126 37.3
CsaV3_1G044000 Cucumis sativus L. HOM05D002139 ORTHO05D002264 1.6e-07 60.1 100 33.0
Sc24g0002480 Simmondsia chinensis HOM05D002139 ORTHO05D002264 1.6e-07 60.1 109 30.3
AT5G23820 Arabidopsis thaliana HOM05D009123 ORTHO05D011699 2.1e-07 59.7 102 43.1
A09p17660 Brassica napus HOM05D013697 ORTHO05D015934 2.1e-07 59.7 117 40.2
Thecc.09G270000 Theobroma cacao HOM05D002139 ORTHO05D002264 2.1e-07 59.7 104 38.5
Actinidia06185 Actinidia chinensis HOM05D002139 ORTHO05D002264 2.8e-07 59.3 120 35.8
A08p19780 Brassica napus HOM05D014281 ORTHO05D040471 2.8e-07 59.3 146 34.9
Actinidia24264 Actinidia chinensis HOM05D002139 ORTHO05D002264 3.6e-07 58.9 101 36.6
C09p22000 Brassica napus HOM05D013697 ORTHO05D015934 3.6e-07 58.9 117 40.2
BolC9t55104H Brassica oleracea HOM05D013697 ORTHO05D015934 3.6e-07 58.9 117 40.2
THA.LOC104816636 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 3.6e-07 58.9 107 34.6
A07p18490 Brassica napus HOM05D009123 ORTHO05D011699 4.7e-07 58.5 105 38.1
BraA07t29565Z Brassica rapa HOM05D009123 ORTHO05D011699 4.7e-07 58.5 105 38.1
MELO3C009994.2 Cucumis melo HOM05D002139 ORTHO05D002264 6.2e-07 58.2 100 32.0
Gohir.D05G080300 Gossypium hirsutum HOM05D002139 ORTHO05D002264 6.2e-07 58.2 97 38.1
Gohir.D07G117500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 6.2e-07 58.2 100 38.0
Gorai.009G082000 Gossypium raimondii HOM05D002139 ORTHO05D002264 6.2e-07 58.2 97 38.1
Oeu020192.1 Olea europaea HOM05D002139 ORTHO05D002264 6.2e-07 58.2 131 32.1
TWI53G0030 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 6.2e-07 58.2 115 32.2
COL.COLO4_25392 Corchorus olitorius HOM05D002139 ORTHO05D002264 8.1e-07 57.8 100 35.0
Gorai.001G126400 Gossypium raimondii HOM05D002139 ORTHO05D002264 8.1e-07 57.8 100 37.0
Dinv18855 Davidia involucrata HOM05D002139 ORTHO05D002264 1.1e-06 57.4 106 34.0
Potri.016G067800 Populus trichocarpa HOM05D002139 ORTHO05D002264 1.1e-06 57.4 121 32.2
Sed0012069 Sechium edule HOM05D002139 ORTHO05D002264 1.1e-06 57.4 100 35.0
AT3G11780 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 1.4e-06 57.0 98 33.7
BraA03t12888Z Brassica rapa HOM05D002139 ORTHO05D002264 1.4e-06 57.0 126 30.2
BolC3t16778H Brassica oleracea HOM05D002139 ORTHO05D002264 1.8e-06 56.6 126 31.0
Carub.0006s0536 Capsella rubella HOM05D002139 ORTHO05D002264 1.8e-06 56.6 105 31.4
CiPaw.13G120500 Carya illinoinensis HOM05D002139 ORTHO05D002264 1.8e-06 56.6 119 36.1
Medtr1g055435 Medicago truncatula HOM05D002139 ORTHO05D002264 1.8e-06 56.6 93 33.3
Aa31LG4G13660 Aethionema arabicum HOM05D002139 ORTHO05D002264 2.4e-06 56.2 163 31.9
AL6G35100 Arabidopsis lyrata HOM05D009123 ORTHO05D011699 2.4e-06 56.2 104 37.5
BcaC02g10927 Brassica carinata HOM05D009123 ORTHO05D011699 2.4e-06 56.2 105 37.1
A09p16090 Brassica napus HOM05D024654 ORTHO05D028072 2.4e-06 56.2 118 34.7
C04p23580 Brassica napus HOM05D009123 ORTHO05D011699 2.4e-06 56.2 105 37.1
CSS0027061 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 2.4e-06 56.2 128 32.0
Carub.0003s1112 Capsella rubella HOM05D002139 ORTHO05D002264 2.4e-06 56.2 100 34.0
COL.COLO4_29527 Corchorus olitorius HOM05D002139 ORTHO05D002264 2.4e-06 56.2 96 37.5
Lj2A952G13 Lonicera japonica HOM05D002139 ORTHO05D002264 2.4e-06 56.2 101 35.6
Prupe.7G092100 Prunus persica HOM05D002139 ORTHO05D002264 2.4e-06 56.2 100 35.0
Actinidia07288 Actinidia chinensis HOM05D002139 ORTHO05D002264 3.1e-06 55.8 104 34.6
A03p37280 Brassica napus HOM05D002139 ORTHO05D002264 3.1e-06 55.8 127 28.3
AUR62036347 Chenopodium quinoa HOM05D002139 ORTHO05D002264 3.1e-06 55.8 110 35.5
Gohir.D04G092600 Gossypium hirsutum HOM05D002139 ORTHO05D002264 3.1e-06 55.8 101 32.7
Lj5g0006018 Lotus japonicus HOM05D002139 ORTHO05D002264 3.1e-06 55.8 103 34.0
Psat6g126240 Pisum sativum HOM05D002139 ORTHO05D002264 3.1e-06 55.8 102 33.3
Prupe.6G147100 Prunus persica HOM05D002139 ORTHO05D002264 3.1e-06 55.8 108 35.2
Atru.chr3.3084 Acer truncatum HOM05D002139 ORTHO05D002264 4.0e-06 55.5 102 33.3
BraA09t37246Z Brassica rapa HOM05D024654 ORTHO05D028072 4.0e-06 55.5 118 34.7
Duzib106G1445 Durio zibethinus HOM05D002139 ORTHO05D002264 4.0e-06 55.5 108 33.3
Sp6g36380 Schrenkiella parvula HOM05D002139 ORTHO05D002264 4.0e-06 55.5 103 34.0
TWI74G1382 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 4.0e-06 55.5 103 34.0
C09p19360 Brassica napus HOM05D024654 ORTHO05D042960 5.2e-06 55.1 118 34.7
C09p22010 Brassica napus HOM05D013697 ORTHO05D015934 5.2e-06 55.1 114 39.5
BolC9t55105H Brassica oleracea HOM05D013697 ORTHO05D015934 5.2e-06 55.1 114 39.5
Glyma.10G083300 Glycine max HOM05D002139 ORTHO05D002264 5.2e-06 55.1 82 36.6
Gohir.A04G055400 Gossypium hirsutum HOM05D002139 ORTHO05D002264 5.2e-06 55.1 101 32.7
Sabra16G0068800 Salix brachista HOM05D002139 ORTHO05D002264 5.2e-06 55.1 121 32.2
Solyc10g081800.2 Solanum lycopersicum HOM05D002139 ORTHO05D002264 5.2e-06 55.1 108 33.3
Gorai.009G394500 Gossypium raimondii HOM05D002139 ORTHO05D002264 6.8e-06 54.7 101 32.7
Lalb_Chr06g0172701 Lupinus albus HOM05D002139 ORTHO05D002264 6.8e-06 54.7 109 33.9
Sabra06G0155100 Salix brachista HOM05D002139 ORTHO05D002264 6.8e-06 54.7 75 38.7
Sc07g0006390 Simmondsia chinensis HOM05D002139 ORTHO05D002264 6.8e-06 54.7 100 33.0
C03p45140 Brassica napus HOM05D002139 ORTHO05D002264 8.9e-06 54.3 119 29.4
CSS0025933 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 8.9e-06 54.3 128 31.2
CARHR086340 Cardamine hirsuta HOM05D002139 ORTHO05D002264 8.9e-06 54.3 99 34.3
Ca_11675_v3 Cicer arietinum L. HOM05D002139 ORTHO05D002264 8.9e-06 54.3 96 32.3
Ciclev10029503m.g Citrus clementina HOM05D002139 ORTHO05D002264 8.9e-06 54.3 100 30.0
Gohir.A05G077500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 8.9e-06 54.3 97 36.1
PGR119G2506 Punica granatum HOM05D002139 ORTHO05D002264 8.9e-06 54.3 111 35.1
PGSC0003DMG401028141 Solanum tuberosum HOM05D002139 ORTHO05D002264 8.9e-06 54.3 108 33.3


User provided reference genes

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