Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 4.2e-221 771.9 689 100.0
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 4.6e-220 768.5 689 99.7
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 4.6e-220 768.5 689 99.7
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 4.7e-180 635.6 696 84.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 7.5e-178 628.2 698 81.8
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 5.6e-149 532.3 697 75.0
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 4.7e-148 529.3 705 67.7
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 3.2e-128 463.4 697 63.3
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 7.1e-128 462.2 700 73.1
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 4.9e-121 439.5 697 68.3
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 5.5e-112 409.5 701 68.2
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 3.3e-109 400.2 695 60.4
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 4.1e-107 393.3 694 67.1
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 6.9e-107 392.5 651 47.9
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.5e-106 391.3 686 52.9
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 3.4e-106 390.2 530 67.5
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 1.6e-100 371.3 703 63.9
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 5.3e-99 366.3 697 68.6
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 7.7e-98 362.5 698 63.2
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 2.5e-96 357.5 705 61.4
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.1e-79 301.2 679 47.7
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 5.5e-72 276.6 697 53.8
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 9.1e-67 259.2 349 79.4
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 9.1e-67 259.2 349 79.4
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 4.2e-64 250.4 527 43.6
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.0e-62 243.8 527 44.0
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 2.0e-61 241.5 471 48.0
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.6e-61 241.1 528 42.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 7.5e-61 239.6 682 33.6
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.3e-57 228.8 462 36.8
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 2.8e-55 221.1 699 39.5
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 4.7e-55 220.3 466 42.5
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.0e-54 219.2 500 33.0
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.4e-54 218.8 525 44.0
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.3e-54 218.0 496 31.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 5.2e-54 216.9 625 34.7
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 3.4e-53 214.2 474 46.2
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 9.8e-53 212.6 496 33.1
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 2.4e-51 208.0 222 61.3
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 7.0e-51 206.5 482 45.6
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 7.0e-51 206.5 367 51.8
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 5.9e-50 203.4 639 43.2
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 3.0e-49 201.1 440 54.1
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 3.0e-49 201.1 363 38.0
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 3.9e-49 200.7 462 43.5
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 5.0e-49 200.3 621 38.0
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 5.6e-48 196.8 466 48.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.2e-47 195.7 462 42.2
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.4e-46 192.2 470 38.5
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.4e-46 192.2 448 45.8
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 4.0e-46 190.7 483 32.5
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 6.8e-46 189.9 505 40.4
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 8.9e-46 189.5 518 37.8
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.5e-45 188.7 439 44.0
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 3.4e-45 187.6 631 35.2
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 5.8e-45 186.8 627 40.8
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.3e-44 185.7 605 39.8
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 4.1e-43 180.6 385 42.3
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.2e-42 179.1 533 41.8
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 3.5e-42 177.6 553 40.9
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.7e-41 175.3 363 43.3
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 2.5e-40 171.4 442 39.4
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 4.3e-40 170.6 366 45.1
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 5.6e-40 170.2 423 46.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 7.3e-40 169.9 363 39.9
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 9.5e-40 169.5 363 42.7
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 8.9e-38 162.9 575 42.4
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.2e-37 162.5 364 44.2
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.6e-37 161.4 636 39.5
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 3.4e-37 161.0 471 45.2
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 5.8e-37 160.2 379 43.0
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 5.8e-37 160.2 453 36.6
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 9.8e-37 159.5 275 41.8
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 9.8e-37 159.5 433 44.8
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 9.8e-37 159.5 363 41.0
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.2e-36 158.3 471 45.4
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 2.2e-36 158.3 466 31.5
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.9e-36 157.9 362 41.7
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 4.9e-36 157.1 571 42.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 8.3e-36 156.4 456 41.0
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.1e-35 156.0 463 41.9
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 5.4e-35 153.7 631 47.5
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 9.2e-35 152.9 532 33.1
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 1.6e-34 152.1 365 40.8
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.6e-34 152.1 650 36.0
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.6e-34 152.1 365 43.3
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.1e-34 151.8 365 46.0
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.7e-33 148.7 456 36.2
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.3e-32 144.4 464 41.4
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 3.3e-32 144.4 487 35.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 4.7e-31 140.6 650 37.8
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.1e-30 139.4 434 34.8
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-30 139.4 230 42.6
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.8e-30 138.7 421 35.6
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.8e-30 138.7 634 36.6
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 5.2e-30 137.1 238 67.2
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 6.8e-30 136.7 180 45.0
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 6.8e-30 136.7 381 35.2
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.3e-28 132.5 475 39.2
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.1e-27 129.4 633 37.8
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.4e-27 128.3 462 45.0
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.2e-27 127.9 197 45.2
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.6e-26 125.6 275 32.0
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.6e-26 125.6 444 30.2
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.6e-26 125.6 442 39.8
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.7e-26 124.8 467 37.7
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 3.5e-26 124.4 152 47.4
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 6.0e-26 123.6 474 32.7
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 2.3e-25 121.7 323 41.8
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.9e-25 120.9 189 44.4
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 3.9e-25 120.9 462 36.6
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 8.6e-25 119.8 471 32.9
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.5e-24 118.2 155 45.8
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 2.5e-24 118.2 361 38.5
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 2.8e-23 114.8 521 31.9
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 4.7e-23 114.0 485 37.7
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 6.2e-23 113.6 528 32.4
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 6.2e-23 113.6 161 42.2
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.4e-22 112.5 369 43.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.8e-22 112.1 362 37.6
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 5.2e-22 110.5 462 32.9
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.8e-22 110.2 115 55.7
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.2e-21 109.4 435 22.8
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.5e-21 109.0 372 33.3
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.6e-21 108.2 176 40.3
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.3e-20 105.9 198 35.4
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.3e-20 105.9 363 24.8
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.7e-20 105.5 464 40.1
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 4.9e-20 104.0 543 33.5
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 8.4e-20 103.2 362 36.2
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.4e-19 102.4 428 22.0
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 6.0e-18 97.1 343 40.2
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 3.0e-17 94.7 140 42.1
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.9e-17 94.4 201 35.8
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 9.6e-16 89.7 342 42.1
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 2.6e-13 81.6 364 31.0
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 2.2e-12 78.6 467 32.1
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 2.2e-12 78.6 467 32.1
BolC1t04794H Brassica oleracea HOM05D015723 ORTHO05D003275 3.8e-12 77.8 58 69.0
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 4.9e-12 77.4 489 27.0
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 4.9e-12 77.4 275 24.4
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 7.1e-11 73.6 392 21.7
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 7.1e-11 73.6 382 26.7
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 9.3e-11 73.2 193 32.1
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 9.3e-11 73.2 378 38.9
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.0e-09 68.2 153 32.0
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 3.3e-08 64.7 361 29.1


User provided reference genes

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