Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p47950 Brassica napus HOM05D002695 ORTHO05D041061 2.4e-92 342.4 207 100.0
BolC3t17075H Brassica oleracea HOM05D002695 ORTHO05D041061 3.4e-91 338.6 207 99.5
Thhalv10020136m.g Eutrema salsugineum HOM05D002695 ORTHO05D002964 4.2e-49 198.7 286 48.6
BcaB04g20896 Brassica carinata HOM05D002695 ORTHO05D002964 5.7e-46 188.3 286 53.8
CARHR091060 Cardamine hirsuta HOM05D002695 ORTHO05D002964 7.5e-46 188.0 288 51.7
AL3G28560 Arabidopsis lyrata HOM05D002695 ORTHO05D002964 1.3e-45 187.2 285 47.0
AT3G15920 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 2.8e-45 186.0 283 46.6
BcaC09g48569 Brassica carinata HOM05D002695 ORTHO05D002964 1.1e-44 184.1 275 57.1
C01p48460 Brassica napus HOM05D002695 ORTHO05D002964 3.1e-44 182.6 275 56.4
BolC1t04806H Brassica oleracea HOM05D002695 ORTHO05D002964 3.1e-44 182.6 275 56.4
BraA01t03877Z Brassica rapa HOM05D002695 ORTHO05D002964 3.1e-44 182.6 287 54.7
Sp3g14240 Schrenkiella parvula HOM05D002695 ORTHO05D002964 2.0e-43 179.9 286 47.2
Aa31LG8G3090 Aethionema arabicum HOM05D002695 ORTHO05D002964 1.9e-41 173.3 311 43.1
Carub.0003s1566 Capsella rubella HOM05D002695 ORTHO05D002964 4.3e-41 172.2 283 45.6
THA.LOC104818021 Tarenaya hassleriana HOM05D002695 ORTHO05D002964 2.8e-32 142.9 281 43.1
Thecc.06G030300 Theobroma cacao HOM05D002695 ORTHO05D002964 4.3e-25 119.0 286 35.3
Cpa.g.sc167.2 Carica papaya HOM05D002695 ORTHO05D002964 2.1e-24 116.7 289 33.9
MD17G1213900 Malus domestica HOM05D002695 ORTHO05D002964 5.2e-23 112.1 289 32.2
CiPaw.01G249300 Carya illinoinensis HOM05D002695 ORTHO05D002964 1.5e-22 110.5 290 34.5
CiPaw.02G157900 Carya illinoinensis HOM05D002695 ORTHO05D002964 7.5e-22 108.2 290 33.1
FAN05G1325 Fragaria x ananassa HOM05D002695 ORTHO05D002964 7.5e-22 108.2 289 32.2
Haze_16574 Corylus avellana HOM05D002695 ORTHO05D002964 1.7e-21 107.1 290 32.8
Manes.04G111600 Manihot esculenta HOM05D002695 ORTHO05D002964 1.7e-21 107.1 288 31.9
Dinv30618 Davidia involucrata HOM05D002695 ORTHO05D002964 2.2e-21 106.7 288 31.9
Duzib160G0818 Durio zibethinus HOM05D002695 ORTHO05D002964 2.2e-21 106.7 286 32.9
FAN02G0115 Fragaria x ananassa HOM05D002695 ORTHO05D002964 3.7e-21 105.9 289 30.4
Atru.chr1.2893 Acer truncatum HOM05D002695 ORTHO05D002964 6.4e-21 105.1 289 32.9
COL.COLO4_11913 Corchorus olitorius HOM05D002695 ORTHO05D002964 6.4e-21 105.1 297 33.3
Prupe.3G089800 Prunus persica HOM05D002695 ORTHO05D002964 6.4e-21 105.1 289 31.5
Actinidia15751 Actinidia chinensis HOM05D002695 ORTHO05D002964 8.3e-21 104.8 283 31.4
Sc10g0006020 Simmondsia chinensis HOM05D002695 ORTHO05D002964 8.3e-21 104.8 291 32.6
Cfa001951 Carpinus fangiana HOM05D002695 ORTHO05D002964 1.4e-20 104.0 290 30.7
Ciclev10024984m.g Citrus clementina HOM05D002695 ORTHO05D002964 1.9e-20 103.6 289 32.9
PGR102G1641 Punica granatum HOM05D002695 ORTHO05D002964 2.4e-20 103.2 290 31.4
CSS0040579 Camellia sinensis var. sinensis HOM05D002695 ORTHO05D002964 4.1e-20 102.4 288 30.9
Eucgr.F03888 Eucalyptus grandis HOM05D002695 ORTHO05D002964 4.1e-20 102.4 290 32.8
Sabra01G0159500 Salix brachista HOM05D002695 ORTHO05D002964 4.1e-20 102.4 288 33.0
TAR636G3025 Trochodendron aralioides HOM05D002695 ORTHO05D002964 7.1e-20 101.7 290 31.7
Eucgr.F03886 Eucalyptus grandis HOM05D002695 ORTHO05D002964 9.2e-20 101.3 290 32.4
RcHm_v2.0_Chr2g0134961 Rosa chinensis HOM05D002695 ORTHO05D002964 9.2e-20 101.3 291 30.9
FAN09G0304 Fragaria x ananassa HOM05D002695 ORTHO05D002964 2.1e-19 100.1 289 30.4
FvH4_6g29460 Fragaria vesca HOM05D002695 ORTHO05D002964 4.6e-19 99.0 289 30.4
FAN14G2212 Fragaria x ananassa HOM05D002695 ORTHO05D002964 4.6e-19 99.0 289 30.4
Glyma.13G366600 Glycine max HOM05D002695 ORTHO05D002964 1.3e-18 97.4 289 29.4
Lj3g0003229 Lotus japonicus HOM05D002695 ORTHO05D002964 1.3e-18 97.4 289 29.1
QL05p030652 Quercus lobata HOM05D002695 ORTHO05D002964 3.0e-18 96.3 289 29.4
arahy.Tifrunner.gnm1.ann1.E3M3ZX Arachis hypogaea HOM05D002695 ORTHO05D002964 8.6e-18 94.7 292 29.5
arahy.Tifrunner.gnm1.ann1.XRJX2S Arachis hypogaea HOM05D002695 ORTHO05D002964 8.6e-18 94.7 292 29.5
Lj1C756G2 Lonicera japonica HOM05D002695 ORTHO05D002964 8.6e-18 94.7 293 29.4
Ca_01050_v3 Cicer arietinum L. HOM05D002695 ORTHO05D002964 1.1e-17 94.4 287 28.6
GSVIVG01017363001 Vitis vinifera HOM05D002695 ORTHO05D002964 1.5e-17 94.0 290 30.0
Rhsim08G0212100 Rhododendron simsii HOM05D002695 ORTHO05D002964 4.3e-17 92.4 288 30.6
Medtr2g104070 Medicago truncatula HOM05D002695 ORTHO05D002964 1.2e-16 90.9 287 27.2
Aqoxy7G03638 Aquilegia oxysepala HOM05D002695 ORTHO05D002964 2.1e-16 90.1 290 31.4
Nn8g40760 Nelumbo nucifera HOM05D002695 ORTHO05D002964 2.1e-16 90.1 291 29.6
SalBow2G2196 Salvia bowleyana HOM05D002695 ORTHO05D002964 3.6e-16 89.4 279 29.7
TWI12G0825 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 8.1e-16 88.2 286 30.1
VMungo1080G0605 Vigna mungo HOM05D002695 ORTHO05D002964 1.1e-15 87.8 289 27.3
Actinidia01735 Actinidia chinensis HOM05D002695 ORTHO05D002964 1.8e-15 87.0 216 32.4
CANSAT56G0329 Cannabis sativa HOM05D002695 ORTHO05D002964 3.1e-15 86.3 291 27.8
MBI15_g32305_MAGBIO Magnolia biondii HOM05D002695 ORTHO05D002964 4.0e-15 85.9 293 28.7
AUR62011508 Chenopodium quinoa HOM05D002695 ORTHO05D002964 5.2e-15 85.5 268 31.3
Dinv08630 Davidia involucrata HOM05D002695 ORTHO05D002964 5.2e-15 85.5 285 29.1
AUR62016326 Chenopodium quinoa HOM05D002695 ORTHO05D002964 3.4e-14 82.8 270 30.4
Oeu056068.1 Olea europaea HOM05D002695 ORTHO05D002964 3.4e-14 82.8 250 30.4
PSO210G7357 Papaver somniferum HOM05D002695 ORTHO05D002964 3.4e-14 82.8 256 29.3
TPR.G37279 Trifolium pratense HOM05D002695 ORTHO05D002964 3.4e-14 82.8 281 27.8
PSO210G1992 Papaver somniferum HOM05D002695 ORTHO05D002964 4.4e-14 82.4 276 27.9
Cc04_g04510 Coffea canephora HOM05D002695 ORTHO05D002964 7.6e-14 81.6 288 28.8
CiPaw.07G224300 Carya illinoinensis HOM05D002695 ORTHO05D002964 1.7e-13 80.5 251 28.7
Lalb_Chr24g0395441 Lupinus albus HOM05D002695 ORTHO05D002964 2.2e-13 80.1 244 30.3
PGSC0003DMG400000644 Solanum tuberosum HOM05D002695 ORTHO05D002964 2.9e-13 79.7 284 28.5
ATR0320G044 Amborella trichopoda HOM05D002695 ORTHO05D002964 3.8e-13 79.3 308 28.9
Gorai.010G115900 Gossypium raimondii HOM05D002695 ORTHO05D002964 6.4e-13 78.6 129 41.1
vmacro19008 Vaccinium macrocarpon HOM05D002695 ORTHO05D002964 8.4e-13 78.2 288 29.2
Gohir.D06G100800 Gossypium hirsutum HOM05D002695 ORTHO05D002964 1.1e-12 77.8 129 41.1
Gohir.A06G098700 Gossypium hirsutum HOM05D002695 ORTHO05D002964 1.4e-12 77.4 129 41.1
Hma1.2p1_0043F.1_g025850 Hydrangea macrophylla HOM05D002695 ORTHO05D002964 1.4e-12 77.4 165 35.8
Sopen03g035750 Solanum pennellii HOM05D002695 ORTHO05D002964 1.9e-12 77.0 284 27.5
Dinv18209 Davidia involucrata HOM05D002695 ORTHO05D002964 2.4e-12 76.6 141 37.6
Solyc03g116820.4 Solanum lycopersicum HOM05D002695 ORTHO05D002964 2.4e-12 76.6 276 27.9
A01p38190 Brassica napus HOM05D002695 ORTHO05D002964 3.2e-12 76.3 58 70.7
vmacro05172 Vaccinium macrocarpon HOM05D002695 ORTHO05D002964 3.2e-12 76.3 262 29.0
COL.COLO4_18872 Corchorus olitorius HOM05D002695 ORTHO05D002964 4.2e-12 75.9 156 37.2
Psat5g303240 Pisum sativum HOM05D002695 ORTHO05D002964 4.2e-12 75.9 130 37.7
EL10Ac9g21881 Beta vulgaris HOM05D002695 ORTHO05D002964 5.4e-12 75.5 133 38.3
Phvul.005G179100 Phaseolus vulgaris HOM05D002695 ORTHO05D002964 1.2e-11 74.3 289 25.6
Medtr3g106770 Medicago truncatula HOM05D002695 ORTHO05D002964 2.1e-11 73.6 129 38.8
Nitab4.5_0003463g0020 Nicotiana tabacum HOM05D002695 ORTHO05D002964 2.7e-11 73.2 294 26.2
CDE03G0280 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 4.6e-11 72.4 289 26.0
Duzib150G1316 Durio zibethinus HOM05D002695 ORTHO05D002964 6.0e-11 72.0 142 35.2
Ca_15746_v3 Cicer arietinum L. HOM05D002695 ORTHO05D002964 7.8e-11 71.6 142 35.9
Gohir.A07G029000 Gossypium hirsutum HOM05D002695 ORTHO05D002964 7.8e-11 71.6 142 35.9
QL02p021402 Quercus lobata HOM05D002695 ORTHO05D002964 7.8e-11 71.6 249 34.5
Hund30133 Selenicereus undatus HOM05D002695 ORTHO05D002964 7.8e-11 71.6 158 34.8
Glyma.06G067100 Glycine max HOM05D002695 ORTHO05D002964 1.0e-10 71.2 129 37.2
Lalb_Chr22g0350831 Lupinus albus HOM05D002695 ORTHO05D002964 1.3e-10 70.9 236 29.2
Oeu010900.1 Olea europaea HOM05D002695 ORTHO05D002964 1.3e-10 70.9 173 35.3
Psat5g029320 Pisum sativum HOM05D002695 ORTHO05D002964 1.3e-10 70.9 142 35.2
VMungo1309G2073 Vigna mungo HOM05D002695 ORTHO05D002964 1.7e-10 70.5 129 38.0
DCAR_006212 Daucus carota HOM05D002695 ORTHO05D002964 2.3e-10 70.1 129 38.8
TWI34G0457 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 2.3e-10 70.1 134 36.6
Glyma.04G065700 Glycine max HOM05D002695 ORTHO05D002964 3.0e-10 69.7 129 36.4
Lj8C705G2 Lonicera japonica HOM05D002695 ORTHO05D002964 3.0e-10 69.7 130 37.7
MD15G1126500 Malus domestica HOM05D002695 ORTHO05D002964 3.0e-10 69.7 258 27.5
Thecc.09G023100 Theobroma cacao HOM05D002695 ORTHO05D002964 3.0e-10 69.7 141 36.2
BcaNung03142 Brassica carinata HOM05D002695 ORTHO05D002964 3.9e-10 69.3 187 31.6
Eucgr.C01726 Eucalyptus grandis HOM05D002695 ORTHO05D002964 3.9e-10 69.3 130 39.2
Thhalv10024530m.g Eutrema salsugineum HOM05D002695 ORTHO05D002964 3.9e-10 69.3 187 31.0
A01p06170 Brassica napus HOM05D002695 ORTHO05D002964 5.1e-10 68.9 187 31.6
BraA01t00583Z Brassica rapa HOM05D002695 ORTHO05D002964 5.1e-10 68.9 187 31.6
DCAR_001533 Daucus carota HOM05D002695 ORTHO05D002964 5.1e-10 68.9 164 32.9
Gohir.D07G033000 Gossypium hirsutum HOM05D002695 ORTHO05D002964 5.1e-10 68.9 142 35.9
Gorai.001G034600 Gossypium raimondii HOM05D002695 ORTHO05D002964 5.1e-10 68.9 142 35.9
FAN15G2469 Fragaria x ananassa HOM05D002695 ORTHO05D002964 6.6e-10 68.6 123 36.6
A03p61250 Brassica napus HOM05D002695 ORTHO05D002964 8.7e-10 68.2 187 32.1
Hma1.2p1_1339F.1_g276610 Hydrangea macrophylla HOM05D002695 ORTHO05D002964 8.7e-10 68.2 123 39.8
Phvul.009G092100 Phaseolus vulgaris HOM05D002695 ORTHO05D002964 8.7e-10 68.2 129 36.4
TPR.G3158 Trifolium pratense HOM05D002695 ORTHO05D002964 8.7e-10 68.2 129 37.2
BcaC09g52002 Brassica carinata HOM05D002695 ORTHO05D002964 1.1e-09 67.8 187 33.2
FAN27G2745 Fragaria x ananassa HOM05D002695 ORTHO05D002964 1.1e-09 67.8 123 36.6
C01p06800 Brassica napus HOM05D002695 ORTHO05D002964 1.5e-09 67.4 187 33.7
BolC1t00674H Brassica oleracea HOM05D002695 ORTHO05D002964 1.5e-09 67.4 187 33.7
BraA03t15169Z Brassica rapa HOM05D002695 ORTHO05D002964 1.9e-09 67.0 187 31.6
CAN.G407.71 Capsicum annuum HOM05D002695 ORTHO05D002964 1.9e-09 67.0 266 26.3
Migut.A00032 Erythranthe guttata HOM05D002695 ORTHO05D002964 1.9e-09 67.0 121 38.8
Rhsim07G0159300 Rhododendron simsii HOM05D002695 ORTHO05D002964 1.9e-09 67.0 247 28.3
Actinidia14600 Actinidia chinensis HOM05D002695 ORTHO05D002964 2.5e-09 66.6 256 28.5
AT4G32160 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 2.5e-09 66.6 187 32.6
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 7.3e-09 65.1 168 31.0
Duzib192G0949 Durio zibethinus HOM05D002695 ORTHO05D002964 7.3e-09 65.1 286 26.9
Lj1g0011228 Lotus japonicus HOM05D002695 ORTHO05D002964 1.2e-08 64.3 126 36.5
Atru.chr7.2445 Acer truncatum HOM05D002695 ORTHO05D002964 1.6e-08 63.9 123 38.2
arahy.Tifrunner.gnm1.ann1.DLQB4B Arachis hypogaea HOM05D002695 ORTHO05D002964 1.6e-08 63.9 139 32.4
Potri.018G026000 Populus trichocarpa HOM05D002695 ORTHO05D002964 1.6e-08 63.9 130 36.9
C07p59100 Brassica napus HOM05D002695 ORTHO05D002964 2.1e-08 63.5 187 29.9
Lalb_Chr11g0063681 Lupinus albus HOM05D002695 ORTHO05D002964 2.1e-08 63.5 139 33.8
Potri.006G256000 Populus trichocarpa HOM05D002695 ORTHO05D002964 2.1e-08 63.5 240 31.7
Sed0003168 Sechium edule HOM05D002695 ORTHO05D002964 2.1e-08 63.5 129 34.1
TWI75G1220 Tripterygium wilfordii HOM05D002695 ORTHO05D002964 2.1e-08 63.5 286 25.5
CANSAT25G2957 Cannabis sativa HOM05D002695 ORTHO05D002964 3.6e-08 62.8 129 36.4
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 3.6e-08 62.8 166 33.7
FAN20G0785 Fragaria x ananassa HOM05D002695 ORTHO05D002964 3.6e-08 62.8 246 27.6
Aa31LG2G17770 Aethionema arabicum HOM05D002695 ORTHO05D002964 8.1e-08 61.6 204 27.5
Nitab4.5_0008560g0020 Nicotiana tabacum HOM05D002695 ORTHO05D002964 8.1e-08 61.6 293 25.3
MD08G1155500 Malus domestica HOM05D002695 ORTHO05D002964 1.1e-07 61.2 120 34.2
SalBow4G1113 Salvia bowleyana HOM05D002695 ORTHO05D002964 1.1e-07 61.2 161 33.5
Cpa.g.sc217.13 Carica papaya HOM05D002695 ORTHO05D002964 1.4e-07 60.8 121 46.3
Cfa013131 Carpinus fangiana HOM05D002695 ORTHO05D002964 1.4e-07 60.8 118 37.3
FvH4_2g28930 Fragaria vesca HOM05D002695 ORTHO05D002964 1.4e-07 60.8 112 37.5
CAN.G985.3 Capsicum annuum HOM05D002695 ORTHO05D002964 1.8e-07 60.5 120 36.7
Ciclev10007589m.g Citrus clementina HOM05D002695 ORTHO05D002964 1.8e-07 60.5 129 34.9
MELO3C003708.2 Cucumis melo HOM05D002695 ORTHO05D002964 1.8e-07 60.5 168 29.8
Peaxi162Scf00332g00539 Petunia axillaris HOM05D002695 ORTHO05D002964 1.8e-07 60.5 244 25.8
Peaxi162Scf01131g00013 Petunia axillaris HOM05D002695 ORTHO05D002964 1.8e-07 60.5 140 32.1
RcHm_v2.0_Chr6g0297751 Rosa chinensis HOM05D002695 ORTHO05D002964 1.8e-07 60.5 251 27.5
Lalb_Chr23g0268461 Lupinus albus HOM05D002695 ORTHO05D002964 2.4e-07 60.1 138 32.6
Prupe.1G482400 Prunus persica HOM05D002695 ORTHO05D002964 3.1e-07 59.7 242 26.9
Actinidia15669 Actinidia chinensis HOM05D002695 ORTHO05D002964 4.0e-07 59.3 132 35.6
Carub.0007s0840 Capsella rubella HOM05D002695 ORTHO05D002964 4.0e-07 59.3 187 29.4
BolC7t46358H Brassica oleracea HOM05D002695 ORTHO05D002964 5.3e-07 58.9 187 28.9
Gohir.A10G072900 Gossypium hirsutum HOM05D002695 ORTHO05D002964 5.3e-07 58.9 253 26.5
PGR031G0813 Punica granatum HOM05D002695 ORTHO05D002964 5.3e-07 58.9 152 32.2
FAN24G0091 Fragaria x ananassa HOM05D002695 ORTHO05D002964 6.9e-07 58.5 245 26.9
HanXRQChr16g0510741 Helianthus annuus HOM05D002695 ORTHO05D002964 6.9e-07 58.5 134 35.1
TAR625G0548 Trochodendron aralioides HOM05D002695 ORTHO05D002964 6.9e-07 58.5 288 31.2
Nitab4.5_0002042g0030 Nicotiana tabacum HOM05D002695 ORTHO05D002964 9.0e-07 58.2 136 47.8
Nitab4.5_0002408g0040 Nicotiana tabacum HOM05D002695 ORTHO05D002964 9.0e-07 58.2 136 33.1
Hund25561 Selenicereus undatus HOM05D002695 ORTHO05D002964 9.0e-07 58.2 162 30.2
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.2e-06 57.8 218 28.9
Sabra18G0028500 Salix brachista HOM05D002695 ORTHO05D002964 1.2e-06 57.8 242 26.9
Sed0017615 Sechium edule HOM05D002695 ORTHO05D002964 1.2e-06 57.8 142 29.6
Solyc08g042130.2 Solanum lycopersicum HOM05D002695 ORTHO05D002964 1.5e-06 57.4 131 34.4
Sopen08g012640 Solanum pennellii HOM05D002695 ORTHO05D002964 1.5e-06 57.4 131 34.4
SHI11230 Sapria himalayana HOM05D002695 ORTHO05D002964 2.0e-06 57.0 165 31.5
THA.LOC104818613 Tarenaya hassleriana HOM05D002695 ORTHO05D002964 2.0e-06 57.0 130 33.1
unitig_748.g7555 Utricularia gibba HOM05D002695 ORTHO05D002964 2.0e-06 57.0 129 30.2
Gohir.D10G078100 Gossypium hirsutum HOM05D002695 ORTHO05D002964 2.6e-06 56.6 253 26.1
AT2G25350 Arabidopsis thaliana HOM05D002695 ORTHO05D002964 4.4e-06 55.8 131 30.5
Gorai.011G084800 Gossypium raimondii HOM05D002695 ORTHO05D002964 5.8e-06 55.5 253 25.7
GSVIVG01035873001 Vitis vinifera HOM05D002695 ORTHO05D002964 5.8e-06 55.5 107 36.4
Hund04504 Selenicereus undatus HOM05D002695 ORTHO05D002964 7.6e-06 55.1 130 34.6
HPP92_023796 Vanilla planifolia HOM05D002695 ORTHO05D002964 7.6e-06 55.1 127 29.9
A03p39580 Brassica napus HOM05D002695 ORTHO05D099790 9.9e-06 54.7 35 82.9


User provided reference genes

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