Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 1.2e-32 142.5 69 100.0
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 2.3e-31 138.3 68 95.6
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.2e-16 89.4 68 70.6
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.8e-12 75.5 37 91.9
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 1.8e-12 75.5 37 91.9
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 1.8e-12 75.5 37 89.2
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.8e-12 75.5 37 91.9
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.8e-12 75.5 37 91.9
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 1.8e-12 75.5 37 91.9
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 1.8e-12 75.5 37 91.9
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.4e-12 75.1 37 89.2
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.4e-12 75.1 37 89.2
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 2.4e-12 75.1 37 89.2
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 2.4e-12 75.1 37 89.2
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.4e-12 75.1 37 89.2
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.4e-12 75.1 37 89.2
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 1.5e-11 72.4 37 89.2
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 4.5e-11 70.9 37 83.8
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 5.8e-11 70.5 77 50.6
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 83.8
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 86.5
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 86.5
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 86.5
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 86.5
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 86.5
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 83.8
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 86.5
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 1.7e-10 68.9 37 86.5
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 2.2e-10 68.6 37 81.1
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 2.2e-10 68.6 37 86.5
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 2.2e-10 68.6 37 86.5
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 2.2e-10 68.6 37 83.8
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 2.9e-10 68.2 37 83.8
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 2.9e-10 68.2 37 86.5
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 2.9e-10 68.2 37 83.8
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 2.9e-10 68.2 37 86.5
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 2.9e-10 68.2 37 86.5
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 3.8e-10 67.8 37 86.5
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 3.8e-10 67.8 37 86.5
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 3.8e-10 67.8 37 86.5
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 4.9e-10 67.4 37 83.8
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 83.8
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 83.8
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 81.1
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 83.8
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 83.8
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 81.1
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 83.8
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 83.8
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 6.4e-10 67.0 37 83.8
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 8.4e-10 66.6 37 83.8
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 8.4e-10 66.6 37 81.1
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 8.4e-10 66.6 37 81.1
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 8.4e-10 66.6 37 81.1
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 8.4e-10 66.6 37 83.8
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 8.4e-10 66.6 37 83.8
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.1e-09 66.2 37 81.1
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 1.1e-09 66.2 37 81.1
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.1e-09 66.2 37 83.8
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.1e-09 66.2 37 81.1
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.1e-09 66.2 37 81.1
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.4e-09 65.9 37 83.8
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 1.4e-09 65.9 37 78.4
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.4e-09 65.9 37 81.1
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.4e-09 65.9 37 83.8
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.4e-09 65.9 37 83.8
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 1.9e-09 65.5 37 81.1
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 1.9e-09 65.5 37 81.1
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.9e-09 65.5 37 83.8
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 81.1
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 78.4
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 78.4
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 83.8
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 83.8
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 78.4
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 86.5
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 81.1
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 81.1
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.4e-09 65.1 37 78.4
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 3.2e-09 64.7 37 81.1
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 3.2e-09 64.7 37 78.4
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.2e-09 64.7 37 81.1
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 3.2e-09 64.7 37 78.4
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 3.2e-09 64.7 37 73.0
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 3.2e-09 64.7 37 81.1
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 3.2e-09 64.7 37 81.1
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 4.2e-09 64.3 37 75.7
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 4.2e-09 64.3 37 75.7
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 4.2e-09 64.3 37 78.4
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 5.4e-09 63.9 37 78.4
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 5.4e-09 63.9 37 81.1
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 7.1e-09 63.5 37 75.7
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 7.1e-09 63.5 37 75.7
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 9.3e-09 63.2 37 81.1
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 9.3e-09 63.2 37 73.0
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.6e-08 62.4 37 81.1
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 1.6e-08 62.4 37 73.0
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 2.7e-08 61.6 37 73.0
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.5e-08 61.2 37 70.3
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 4.6e-08 60.8 37 75.7
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 6.0e-08 60.5 37 70.3
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 6.0e-08 60.5 37 73.0
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 7.9e-08 60.1 37 70.3
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.8e-07 58.9 37 64.9
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.9e-06 55.5 37 67.6


User provided reference genes

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