Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p46700 Brassica napus HOM05D009071 ORTHO05D011247 5.1e-25 118.6 188 100.0
BcaC01g03961 Brassica carinata HOM05D009071 ORTHO05D011247 1.3e-20 104.0 188 78.7
BolC3t16935H Brassica oleracea HOM05D009071 ORTHO05D011247 1.3e-20 104.0 188 78.7
BraA03t13006Z Brassica rapa HOM05D009071 ORTHO05D011247 1.6e-18 97.1 49 98.0
A03p38590 Brassica napus HOM05D009071 ORTHO05D011247 4.6e-18 95.5 48 97.9
AL3G26160 Arabidopsis lyrata HOM05D009071 ORTHO05D011247 5.1e-17 92.0 48 93.8
Sp3g12210 Schrenkiella parvula HOM05D009071 ORTHO05D011247 8.7e-17 91.3 49 91.8
Carub.0003s1354 Capsella rubella HOM05D009071 ORTHO05D011247 3.3e-16 89.4 48 89.6
CARHR088780 Cardamine hirsuta HOM05D009071 ORTHO05D011247 4.3e-16 89.0 48 91.7
BcaB04g18815 Brassica carinata HOM05D009071 ORTHO05D011247 1.2e-13 80.9 47 91.5
Aa31LG8G1160 Aethionema arabicum HOM05D009071 ORTHO05D011247 2.0e-13 80.1 45 82.2
BcaB06g25415 Brassica carinata HOM05D009071 ORTHO05D011247 5.8e-13 78.6 51 80.4
A05p35450 Brassica napus HOM05D009071 ORTHO05D011247 2.9e-12 76.3 49 81.6
BraA05t22355Z Brassica rapa HOM05D009071 ORTHO05D011247 2.9e-12 76.3 49 81.6
BolC5t34044H Brassica oleracea HOM05D009071 ORTHO05D011247 3.8e-12 75.9 49 81.6
BcaC05g29137 Brassica carinata HOM05D009071 ORTHO05D011247 8.4e-12 74.7 48 83.3
C05p53760 Brassica napus HOM05D009071 ORTHO05D011247 8.4e-12 74.7 48 83.3
THA.LOC104810363 Tarenaya hassleriana HOM05D009071 ORTHO05D011247 4.6e-10 68.9 42 76.2
AT1G54215 Arabidopsis thaliana HOM05D009071 ORTHO05D011247 1.3e-07 60.8 43 67.4
Thhalv10012303m.g Eutrema salsugineum HOM05D009071 ORTHO05D011247 1.6e-07 60.5 42 69.0
BcaC01g01447 Brassica carinata HOM05D009071 ORTHO05D011247 2.1e-07 60.1 42 66.7
BcaC01g01448 Brassica carinata HOM05D009071 ORTHO05D011247 2.1e-07 60.1 42 66.7
A08p01090 Brassica napus HOM05D009071 ORTHO05D011247 2.1e-07 60.1 42 66.7
C03p92110 Brassica napus HOM05D009071 ORTHO05D011247 2.1e-07 60.1 42 66.7
BraA08t32165Z Brassica rapa HOM05D009071 ORTHO05D011247 2.1e-07 60.1 42 66.7
Carub.0001s4345 Capsella rubella HOM05D009071 ORTHO05D011247 8.1e-07 58.2 46 67.4
BcaB04g17014 Brassica carinata HOM05D009071 ORTHO05D011247 1.1e-06 57.8 46 65.2
ClCG07G014060 Citrullus lanatus HOM05D008345 ORTHO05D010179 1.4e-06 57.4 42 69.0
MELO3C025805.2 Cucumis melo HOM05D008345 ORTHO05D010179 1.4e-06 57.4 42 69.0
Aa31LG4G2900 Aethionema arabicum HOM05D013126 ORTHO05D015256 1.8e-06 57.0 41 65.9
CsaV3_3G031340 Cucumis sativus L. HOM05D008345 ORTHO05D010179 1.8e-06 57.0 42 69.0
BcaC01g01446 Brassica carinata HOM05D009071 ORTHO05D011247 2.4e-06 56.6 40 67.5
AL1G62930 Arabidopsis lyrata HOM05D009071 ORTHO05D011247 6.9e-06 55.1 40 67.5
A06p00440 Brassica napus HOM05D009071 ORTHO05D011247 6.9e-06 55.1 48 60.4
BraA06t23258Z Brassica rapa HOM05D009071 ORTHO05D011247 6.9e-06 55.1 48 60.4


User provided reference genes

Program Settings