Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-231 806.2 419 100.0
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 5.7e-226 787.3 421 97.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.2e-213 744.6 419 93.8
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 9.4e-213 743.4 419 93.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 8.2e-209 730.3 419 92.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 8.2e-209 730.3 419 92.1
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.4e-208 729.6 419 91.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.1e-208 728.4 419 91.9
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 2.0e-207 725.7 422 90.3
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.0e-207 725.7 420 91.2
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 8.5e-206 720.3 423 90.5
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 2.2e-201 705.7 423 88.4
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.7e-196 688.7 422 86.5
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.1e-192 674.9 426 83.1
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.7e-182 642.9 424 80.9
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 5.0e-182 641.3 425 82.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.7e-174 616.3 419 77.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 6.6e-174 614.4 418 77.3
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.3e-173 610.9 419 77.1
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.6e-172 609.8 420 77.6
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.1e-172 609.4 421 76.7
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.6e-172 608.6 419 76.4
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 8.0e-172 607.4 420 76.7
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.0e-171 607.1 421 75.1
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.4e-171 606.7 420 77.6
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 3.0e-171 605.5 427 75.6
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 6.8e-171 604.4 420 75.7
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.2e-170 603.6 419 75.4
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.2e-170 603.6 420 76.0
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.0e-170 602.8 421 74.6
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 9.8e-170 600.5 423 75.4
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.3e-169 600.1 419 74.0
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.2e-169 599.4 419 74.5
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 3.7e-169 598.6 420 76.2
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.9e-169 598.2 418 76.1
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 6.4e-169 597.8 419 74.9
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.2e-168 595.5 420 74.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 7.0e-168 594.3 420 74.5
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.2e-167 593.6 419 75.9
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.0e-167 592.8 422 75.1
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.0e-167 592.8 419 74.2
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 4.6e-167 591.7 420 75.0
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 5.9e-167 591.3 418 74.2
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 7.8e-167 590.9 419 73.5
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.7e-166 589.7 423 73.5
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 5.0e-166 588.2 423 73.5
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 5.0e-166 588.2 420 73.1
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 6.6e-166 587.8 418 73.9
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 8.6e-166 587.4 419 74.0
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 8.6e-166 587.4 422 74.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.1e-165 587.0 422 74.2
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.1e-165 587.0 421 74.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.5e-165 586.6 438 71.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.3e-165 585.1 422 75.6
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 7.3e-165 584.3 419 74.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 9.5e-165 583.9 420 74.8
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 9.5e-165 583.9 419 72.6
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.1e-164 582.8 420 73.1
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.1e-164 582.8 420 73.8
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 3.6e-164 582.0 419 73.0
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 3.6e-164 582.0 419 73.7
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.7e-164 581.6 431 73.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 6.2e-164 581.3 422 72.7
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 6.2e-164 581.3 421 73.2
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.4e-163 580.1 418 72.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.4e-163 580.1 414 74.2
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.8e-163 579.7 419 73.3
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.8e-163 579.7 432 71.3
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.3e-163 579.3 419 73.0
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 3.1e-163 578.9 419 72.1
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.9e-163 577.4 431 72.9
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.5e-162 576.6 422 73.5
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.0e-162 576.2 424 73.1
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 2.0e-162 576.2 417 72.7
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.4e-162 575.5 422 73.2
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.7e-161 573.2 428 69.6
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.2e-161 572.8 414 72.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.7e-161 572.0 451 70.1
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.4e-160 570.1 419 72.1
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.9e-160 569.7 443 70.7
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.9e-160 569.7 451 69.6
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.4e-160 569.3 432 71.3
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.0e-160 567.8 422 72.3
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.2e-159 567.0 457 69.4
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.2e-159 567.0 377 79.6
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.2e-159 567.0 377 79.6
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.6e-159 566.6 420 71.4
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.6e-159 566.6 419 71.8
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.1e-157 560.5 419 70.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.5e-157 560.1 417 70.3
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.5e-157 560.1 421 70.3
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 3.3e-157 558.9 420 70.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 5.6e-157 558.1 422 69.9
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.6e-157 558.1 417 70.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.5e-157 557.4 419 72.1
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 4.7e-156 555.1 421 70.5
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 2.6e-154 549.3 425 68.7
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 5.4e-152 541.6 399 70.7
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 2.7e-151 539.3 419 68.7
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 3.5e-151 538.9 423 68.6
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.3e-150 537.0 359 78.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 5.6e-149 531.6 359 76.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 3.6e-148 528.9 424 67.0
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.0e-146 523.1 346 78.0
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.8e-139 500.0 421 65.6
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.4e-136 489.6 486 58.2
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.4e-136 489.6 486 58.2
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 3.2e-136 489.2 348 71.8
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 7.8e-135 484.6 424 60.1
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.9e-134 482.3 320 77.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 8.4e-129 464.5 420 61.9
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 9.6e-125 451.1 364 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.1e-123 446.0 431 54.8
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.9e-112 410.2 435 54.7
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 3.9e-110 402.5 413 54.5
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.5e-109 400.6 379 56.7
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 7.6e-106 388.3 275 73.5
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.6e-98 363.2 325 62.5
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.7e-95 352.4 336 60.4
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.4e-93 345.1 367 56.9
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.0e-86 324.7 318 55.0
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 3.0e-78 296.6 425 42.1
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.2e-74 284.6 434 40.6
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.7e-74 283.5 264 58.7
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.2e-69 268.1 466 38.0
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.7e-66 255.4 332 46.1
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.7e-65 254.2 475 35.8
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.3e-52 211.5 132 77.3
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 6.4e-52 209.1 149 71.8
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.1e-47 194.1 325 36.9
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.6e-45 187.2 333 37.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.7e-44 183.3 118 78.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 3.7e-44 183.3 333 34.8
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.6e-42 176.4 110 80.0
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.0e-41 173.7 121 74.4
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 9.5e-40 168.7 132 65.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 2.5e-32 144.1 98 72.4
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.8e-30 137.9 155 55.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.9e-28 130.6 117 59.8
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 4.7e-23 113.2 57 93.0
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.2e-22 109.8 58 84.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.4e-19 99.8 110 51.8
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.0e-17 95.5 69 72.5
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 5.1e-17 93.2 138 42.8
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.1e-16 92.0 95 55.8
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-14 85.5 65 66.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.6e-13 80.9 103 45.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.2e-10 72.0 48 70.8
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.1e-10 71.2 52 65.4
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 2.7e-10 70.9 65 61.5
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 4.6e-10 70.1 59 64.4
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.8e-09 68.2 55 63.6
AL3G46510 Arabidopsis lyrata HOM05D000076 ORTHO05D002344 3.9e-09 67.0 43 81.4
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 7.4e-08 62.8 31 87.1
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 7.4e-08 62.8 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 7.4e-08 62.8 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 7.4e-08 62.8 36 83.3
arahy.Tifrunner.gnm1.ann1.MF977T Arachis hypogaea HOM05D000158 ORTHO05D000197 3.7e-07 60.5 63 57.1
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 3.7e-07 60.5 172 26.7
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 3.7e-07 60.5 172 26.7
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 4.8e-07 60.1 172 26.7
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 4.8e-07 60.1 172 26.7
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-07 59.3 172 26.7
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-06 58.5 56 55.4
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-06 58.5 161 28.0
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.8e-06 58.2 36 83.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.8e-06 58.2 57 54.4
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 5.3e-06 56.6 37 70.3


User provided reference genes

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