Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 3.4e-25 117.5 56 100.0
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 7.8e-22 106.3 56 94.6
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 4.7e-19 97.1 68 75.0
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 4.7e-19 97.1 68 75.0
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 6.1e-19 96.7 70 71.4
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 8.0e-19 96.3 68 73.5
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 8.0e-19 96.3 68 73.5
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 8.0e-19 96.3 68 73.5
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 3.1e-18 94.4 68 73.5
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 3.1e-18 94.4 68 73.5
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 3.1e-18 94.4 68 73.5
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 3.1e-18 94.4 68 73.5
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 3.1e-18 94.4 68 73.5
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 3.1e-18 94.4 68 73.5
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 3.1e-18 94.4 68 72.1
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 5.2e-18 93.6 68 72.1
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 8.9e-18 92.8 68 70.6
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 8.9e-18 92.8 68 72.1
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 8.9e-18 92.8 68 70.6
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 8.9e-18 92.8 68 70.6
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 9.8e-17 89.4 68 67.6
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 8.3e-16 86.3 68 67.6
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 2.7e-14 81.3 68 64.7
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 2.7e-14 81.3 68 64.7
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 7.8e-14 79.7 68 63.2
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.3e-13 78.2 68 63.2
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 3.0e-13 77.8 67 62.7
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 3.9e-13 77.4 68 61.8
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 61.8
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 58.8
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 58.8
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 60.3
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 60.3
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 58.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 58.8
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 58.8
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 8.6e-13 76.3 68 60.3
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 1.1e-12 75.9 66 59.1
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.1e-12 75.9 68 60.3
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.1e-12 75.9 68 60.3
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.1e-12 75.9 68 60.3
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.1e-12 75.9 68 58.8
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.1e-12 75.9 68 58.8
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.1e-12 75.9 68 58.8
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.5e-12 75.5 68 61.8
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.9e-12 75.1 68 58.8
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.5e-12 74.7 68 60.3
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 3.3e-12 74.3 68 58.8
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 7.3e-12 73.2 68 58.8
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 9.5e-12 72.8 68 60.3
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 9.5e-12 72.8 68 57.4
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.2e-11 72.4 65 58.5
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.2e-11 72.4 68 57.4
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.2e-11 72.4 68 55.9
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.1e-11 71.6 68 58.8
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 3.6e-11 70.9 68 58.8
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 3.6e-11 70.9 68 57.4
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 3.6e-11 70.9 64 59.4
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 4.7e-11 70.5 66 59.1
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 6.2e-11 70.1 68 55.9
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 6.2e-11 70.1 68 55.9
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.2e-11 70.1 86 47.7
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.2e-11 70.1 86 47.7
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 8.0e-11 69.7 68 55.9
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 8.0e-11 69.7 68 55.9
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.4e-10 68.9 37 86.5
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 1.8e-10 68.6 66 56.1
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 2.3e-10 68.2 63 57.1
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 2.3e-10 68.2 68 54.4
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 2.3e-10 68.2 68 55.9
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 2.3e-10 68.2 68 52.9
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 3.1e-10 67.8 68 57.4
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 3.1e-10 67.8 68 57.4
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 3.1e-10 67.8 62 58.1
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 4.0e-10 67.4 60 55.0
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 5.2e-10 67.0 68 55.9
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 5.2e-10 67.0 62 58.1
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 5.2e-10 67.0 68 57.4
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 5.2e-10 67.0 62 58.1
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 6.8e-10 66.6 65 53.8
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.5e-09 65.5 68 52.9
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 4.4e-09 63.9 79 48.1
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 7.5e-09 63.2 82 45.1
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 9.8e-09 62.8 31 90.3
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 2.2e-08 61.6 62 53.2
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 2.9e-08 61.2 31 87.1
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 3.7e-08 60.8 46 67.4
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 6.4e-08 60.1 68 48.5
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.3e-08 59.7 31 83.9
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.3e-08 59.7 31 83.9
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.3e-08 59.7 31 83.9
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 8.3e-08 59.7 31 83.9
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.1e-07 59.3 61 54.1
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.9e-07 58.5 31 80.6
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 1.9e-07 58.5 31 83.9
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 4.1e-07 57.4 44 63.6
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 4.1e-07 57.4 44 63.6
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.1e-07 57.4 31 80.6
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 5.4e-07 57.0 31 77.4
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 7.0e-07 56.6 31 80.6
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 7.0e-07 56.6 31 77.4
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.2e-06 55.8 31 77.4
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.2e-06 55.8 31 77.4
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.6e-06 55.5 50 50.0
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.1e-06 55.1 31 80.6
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 2.7e-06 54.7 31 80.6
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 2.7e-06 54.7 31 77.4
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 3.5e-06 54.3 31 74.2
BcaC05g24423 Brassica carinata HOM05D001653 ORTHO05D015791 4.6e-06 53.9 43 60.5
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 7.8e-06 53.1 42 59.5
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 7.8e-06 53.1 31 77.4


User provided reference genes

Program Settings