Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 7.5e-110 400.6 210 100.0
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.7e-109 399.4 210 99.5
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 4.8e-109 397.9 210 99.0
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-108 396.7 210 98.6
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 5.9e-107 391.0 210 97.1
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 5.9e-107 391.0 210 97.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.5e-106 387.5 210 95.2
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.5e-105 385.6 210 96.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 3.2e-105 385.2 210 95.2
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.2e-104 383.3 210 95.2
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.6e-104 382.9 210 94.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 4.7e-104 381.3 210 94.3
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-102 376.7 210 94.3
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.2e-102 376.7 210 93.3
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-102 376.3 210 94.3
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 2.0e-102 375.9 210 94.3
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-102 375.6 210 94.8
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 3.4e-102 375.2 210 92.9
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 3.5e-99 365.2 210 93.8
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.8e-95 352.8 210 90.5
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.4e-92 343.2 210 85.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 5.0e-82 308.1 210 76.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 8.9e-79 297.4 210 73.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.6e-78 295.8 210 71.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 4.4e-78 295.0 210 68.1
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.8e-78 293.9 210 72.4
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.2e-77 292.7 210 69.0
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 6.4e-77 291.2 210 68.6
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 6.4e-77 291.2 210 71.4
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 8.3e-77 290.8 210 68.6
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 8.3e-77 290.8 210 67.6
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 8.3e-77 290.8 210 69.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.3e-77 290.8 210 69.0
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.1e-76 290.4 209 71.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.4e-76 290.0 210 71.9
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.9e-76 289.7 210 68.6
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.9e-76 289.7 210 69.5
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 71.9
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 71.9
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 71.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 71.9
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 70.5
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 69.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.4e-76 289.3 209 71.8
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 71.9
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.4e-76 289.3 210 71.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 3.2e-76 288.9 210 71.9
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.2e-76 288.9 210 70.5
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 4.1e-76 288.5 210 68.6
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 4.1e-76 288.5 210 68.6
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 4.1e-76 288.5 210 68.1
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 7.1e-76 287.7 210 71.0
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 9.2e-76 287.3 210 69.0
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.2e-75 287.0 210 69.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.6e-75 286.6 210 70.0
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.6e-75 286.6 210 69.5
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.1e-75 286.2 210 68.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.1e-75 286.2 210 67.6
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.1e-75 286.2 210 68.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 2.1e-75 286.2 210 69.0
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.1e-75 286.2 211 69.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 2.7e-75 285.8 210 71.9
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.7e-75 285.8 210 68.6
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 3.5e-75 285.4 210 69.0
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.5e-75 285.4 210 67.1
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.5e-75 285.4 210 67.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 6.0e-75 284.6 210 68.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 6.0e-75 284.6 210 68.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 7.8e-75 284.3 209 67.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.0e-74 283.9 210 71.4
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.0e-74 283.9 210 69.0
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.0e-74 283.9 210 70.5
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.0e-74 283.9 210 70.0
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.7e-74 283.1 210 69.0
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.7e-74 283.1 210 69.5
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.7e-74 283.1 210 69.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.7e-74 283.1 207 68.1
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.3e-74 282.7 210 67.1
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-74 282.3 210 68.6
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.0e-74 282.3 210 68.6
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 3.9e-74 282.0 210 69.0
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.9e-74 282.0 210 67.1
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.9e-74 282.0 210 68.1
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.9e-74 282.0 210 66.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 6.6e-74 281.2 210 68.6
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 6.6e-74 281.2 210 69.5
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.6e-74 280.8 210 69.0
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.5e-73 280.0 210 68.6
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.5e-73 279.3 210 68.1
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.5e-73 279.3 210 69.0
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.3e-73 278.9 210 67.1
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 3.3e-73 278.9 210 66.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 2.1e-72 276.2 210 68.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.1e-72 276.2 210 67.1
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 4.7e-72 275.0 211 68.7
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 8.1e-72 274.2 210 64.8
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.4e-71 273.5 208 69.2
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 5.2e-71 271.6 210 65.7
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.2e-70 270.4 210 65.7
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.3e-69 266.9 211 64.9
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.3e-69 266.9 208 67.8
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.7e-69 266.5 211 64.9
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 2.2e-69 266.2 211 64.0
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.9e-69 265.8 210 63.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.2e-68 262.3 210 63.8
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 4.1e-68 261.9 210 62.9
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 7.1e-68 261.2 210 62.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 9.2e-68 260.8 210 64.3
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.6e-67 260.0 208 65.4
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.6e-67 260.0 212 64.2
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 2.1e-67 259.6 210 63.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.5e-67 258.8 210 64.8
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.0e-67 258.1 210 62.9
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 7.8e-67 257.7 210 64.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.1e-65 253.8 210 62.4
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.9e-65 253.1 210 63.3
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 4.3e-65 251.9 208 63.5
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.4e-63 246.1 190 68.4
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.3e-61 240.4 208 61.5
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.0e-58 230.7 208 59.6
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.7e-58 229.9 208 59.6
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.6e-57 224.9 186 64.5
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.4e-55 219.5 201 58.7
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.1e-55 219.2 210 57.1
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.6e-54 216.1 166 68.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 7.6e-54 214.5 210 56.2
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.3e-52 207.6 168 65.5
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 6.6e-50 201.4 169 63.3
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.4e-46 189.1 212 50.9
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 3.3e-41 172.6 165 57.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.4e-39 166.4 155 57.4
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 5.7e-33 145.2 124 60.5
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 6.1e-27 125.2 199 39.7
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 6.5e-21 105.1 188 41.5
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 3.7e-16 89.4 51 80.4
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 3.1e-15 86.3 46 100.0
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 3.1e-15 86.3 46 100.0
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.4e-14 82.8 46 95.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.0e-13 79.0 71 60.6
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 4.4e-09 65.9 54 70.4
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 4.8e-08 62.4 54 66.7
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.8e-08 62.4 45 66.7


User provided reference genes

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