Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 6.0e-109 397.5 201 100.0
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 5.0e-63 245.0 188 70.2
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 4.5e-56 221.9 187 69.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.1e-54 217.2 187 67.4
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 5.6e-54 214.9 187 66.3
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.4e-52 210.3 185 66.5
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.2e-51 207.2 185 64.3
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.5e-51 206.8 185 64.3
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 7.0e-49 198.0 185 61.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 1.6e-48 196.8 185 61.1
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-48 196.8 185 61.1
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-47 192.6 170 66.5
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.6e-45 186.8 185 60.0
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 7.0e-41 171.4 164 64.0
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 4.6e-40 168.7 187 51.3
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.0e-39 167.5 185 50.8
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.7e-39 166.8 187 49.7
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.1e-36 157.5 187 47.6
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 1.7e-31 140.2 89 85.4
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 6.6e-31 138.3 90 80.0
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 3.3e-30 136.0 96 76.0
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 1.2e-29 134.0 89 83.1
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 2.1e-29 133.3 89 78.7
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 3.1e-28 129.4 187 39.6
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 8.9e-28 127.9 90 80.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 6.4e-26 121.7 89 73.0
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.2e-25 119.4 178 42.7
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 4.2e-25 119.0 187 38.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 7.1e-25 118.2 187 38.0
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 9.2e-25 117.9 89 68.5
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.2e-25 117.9 187 38.5
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.5e-24 115.9 185 37.8
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 4.6e-24 115.5 184 38.6
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 7.8e-24 114.8 184 36.4
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.0e-23 114.4 186 37.6
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.7e-23 113.6 186 37.6
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.7e-23 113.6 185 37.8
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 2.3e-23 113.2 185 38.9
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 2.3e-23 113.2 186 41.4
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 2.3e-23 113.2 184 36.4
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.0e-23 112.8 183 38.8
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-23 112.5 183 38.8
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-23 112.5 183 38.8
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.6e-23 111.7 183 37.7
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 6.6e-23 111.7 184 37.5
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 8.7e-23 111.3 187 35.8
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.1e-22 110.9 184 37.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.9e-22 110.2 183 37.7
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.5e-22 109.8 184 35.9
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 3.3e-22 109.4 144 45.1
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 9.6e-22 107.8 184 34.8
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 9.6e-22 107.8 196 35.7
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.2e-21 107.5 187 36.9
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.2e-21 107.5 182 35.7
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.2e-21 107.5 184 36.4
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.2e-21 107.5 192 34.9
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.6e-21 107.1 195 34.9
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 4.7e-21 105.5 187 36.4
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 4.7e-21 105.5 182 36.3
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 8.1e-21 104.8 72 76.4
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.1e-20 104.4 183 35.5
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-20 104.4 72 76.4
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 1.1e-20 104.4 72 76.4
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.1e-20 104.4 184 34.8
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 3.1e-20 102.8 183 35.5
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 6.9e-20 101.7 184 35.3
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.5e-19 100.5 184 35.9
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 1.5e-19 100.5 184 34.2
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 2.6e-19 99.8 182 34.6
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.6e-19 99.8 185 35.7
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 9.9e-19 97.8 185 35.7
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.7e-18 97.1 186 34.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 2.9e-18 96.3 184 35.9
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.4e-18 95.1 187 33.7
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 8.4e-18 94.7 179 34.6
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.4e-17 94.0 72 72.2
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 2.4e-17 93.2 72 70.8
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 2.4e-17 93.2 74 67.6
A03p36320 Brassica napus HOM05D024600 ORTHO05D004680 7.1e-17 91.7 70 70.0
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 7.1e-17 91.7 182 31.3
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 3.5e-16 89.4 199 31.2
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 7.8e-16 88.2 172 32.6
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 1.9e-14 83.6 64 70.3
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 5.6e-14 82.0 256 26.2
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 3.6e-13 79.3 90 57.8
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 5.3e-12 75.5 168 30.4
A05p35220 Brassica napus HOM05D024600 ORTHO05D004680 5.3e-12 75.5 53 73.6
C09p21930 Brassica napus HOM05D024600 ORTHO05D004680 9.0e-12 74.7 53 73.6
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 2.0e-11 73.6 169 29.6
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 2.0e-11 73.6 170 33.5
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.6e-11 73.2 79 50.6
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 3.4e-11 72.8 169 30.8
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 4.5e-11 72.4 53 73.6
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.3e-10 70.9 100 40.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 3.8e-10 69.3 89 42.7
BolC3t16664H Brassica oleracea HOM05D004264 ORTHO05D004680 6.4e-10 68.6 34 91.2
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 8.4e-10 68.2 59 55.9
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.4e-09 67.4 170 27.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.2e-09 66.2 80 47.5
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 4.2e-09 65.9 63 47.6
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 7.1e-09 65.1 136 34.6
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 7.1e-09 65.1 89 42.7
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.6e-08 63.9 63 46.0
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.6e-08 63.9 63 49.2
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.6e-08 63.9 59 49.2
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 1.6e-08 63.9 59 50.8
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 3.5e-08 62.8 89 38.2
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 6.0e-08 62.0 62 46.8
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 7.9e-08 61.6 89 37.1
BolC9t57328H Brassica oleracea HOM05D024600 ORTHO05D004680 1.3e-07 60.8 66 56.1
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.3e-07 60.8 93 36.6
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 3.9e-07 59.3 64 46.9
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 1.5e-06 57.4 59 45.8
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 1.9e-06 57.0 39 79.5
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 2.5e-06 56.6 89 33.7
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 2.5e-06 56.6 118 33.9


User provided reference genes

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