Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 1.1e-306 1055.8 563 100.0
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 9.8e-274 946.4 510 100.0
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 1.3e-273 946.0 510 99.8
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 2.8e-273 944.9 510 99.8
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 9.2e-272 939.9 510 95.9
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 2.8e-268 928.3 510 94.9
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 3.6e-268 927.9 510 94.7
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 6.1e-268 927.2 510 94.7
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 5.2e-267 924.1 531 90.2
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 3.4e-266 921.4 510 93.7
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.2e-265 918.7 510 93.1
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 4.9e-265 917.5 510 92.7
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 6.4e-265 917.1 510 91.8
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 8.3e-265 916.8 510 93.3
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 2.4e-264 915.2 510 92.9
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 4.1e-264 914.4 510 91.4
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 5.4e-264 914.1 510 91.6
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 4.6e-263 911.0 510 91.2
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 4.6e-263 911.0 510 92.7
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 3.0e-262 908.3 510 91.6
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 8.6e-262 906.7 510 90.4
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 5.8e-258 894.0 494 94.5
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.4e-248 862.1 494 89.3
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 1.3e-246 856.3 511 84.1
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 3.9e-246 854.7 510 85.3
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 3.9e-246 854.7 510 84.3
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 5.1e-246 854.4 511 84.5
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 6.6e-246 854.0 511 84.7
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.1e-245 853.2 510 84.9
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 1.5e-245 852.8 511 84.5
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.5e-245 852.8 510 85.1
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 1.9e-245 852.4 510 84.1
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 4.3e-245 851.3 510 83.9
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 5.6e-245 850.9 511 84.5
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 5.6e-245 850.9 510 83.7
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 9.5e-245 850.1 510 83.9
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.2e-244 849.7 510 85.5
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.6e-244 849.4 510 83.9
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.8e-244 848.6 510 85.9
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 2.8e-244 848.6 510 84.3
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 4.7e-244 847.8 510 83.9
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 6.2e-244 847.4 510 84.5
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 6.2e-244 847.4 510 86.3
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.1e-243 846.7 510 83.9
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.1e-243 846.7 510 84.3
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 3.1e-243 845.1 510 87.1
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 3.1e-243 845.1 510 84.3
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 4.0e-243 844.7 510 84.7
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 6.8e-243 844.0 511 84.5
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 2.0e-242 842.4 510 86.9
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 5.8e-242 840.9 511 83.4
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 5.8e-242 840.9 510 82.9
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 5.8e-242 840.9 509 84.7
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 9.9e-242 840.1 510 83.9
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 1.3e-241 839.7 510 86.3
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.7e-241 839.3 510 83.1
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 2.9e-241 838.6 510 86.1
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 3.8e-241 838.2 510 82.7
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 4.9e-241 837.8 510 83.5
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 8.4e-241 837.0 510 82.9
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.1e-240 836.6 510 83.5
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 1.1e-240 836.6 510 82.7
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.4e-240 835.5 510 83.1
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.4e-240 835.5 510 83.1
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 3.2e-240 835.1 510 82.7
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 3.2e-240 835.1 511 83.6
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.2e-240 834.7 510 82.2
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 5.4e-240 834.3 510 82.7
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.6e-239 832.8 510 83.3
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.6e-239 832.8 510 81.8
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 2.1e-239 832.4 510 82.5
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 2.7e-239 832.0 510 82.4
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 3.5e-239 831.6 510 82.7
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 4.6e-239 831.2 510 82.2
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-238 829.7 512 82.0
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.3e-238 829.7 510 82.9
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.7e-238 829.3 510 82.9
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 3.9e-238 828.2 510 82.7
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 5.1e-238 827.8 510 82.7
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.5e-237 826.2 511 81.2
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.9e-237 825.9 510 83.9
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.3e-237 824.7 510 81.8
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 4.3e-237 824.7 510 82.4
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 7.3e-237 823.9 510 82.5
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 7.3e-237 823.9 510 82.2
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 9.6e-237 823.5 511 82.0
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 9.6e-237 823.5 512 85.2
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 2.8e-236 822.0 510 80.8
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 3.6e-236 821.6 510 81.4
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 6.2e-236 820.8 512 84.6
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.4e-235 818.9 510 81.6
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 9.0e-235 817.0 527 79.9
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 4.4e-234 814.7 511 80.6
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 4.4e-234 814.7 502 83.3
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 1.3e-233 813.1 511 81.8
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 1.3e-233 813.1 549 76.7
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 1.7e-233 812.8 511 81.4
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 4.9e-233 811.2 510 80.6
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 8.4e-233 810.4 511 80.2
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.4e-232 809.7 510 80.6
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 3.2e-232 808.5 494 87.2
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 7.1e-232 807.4 510 80.2
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 2.7e-231 805.4 511 80.6
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.7e-230 802.7 441 94.6
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.7e-230 802.7 505 81.6
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 3.0e-230 802.0 510 79.4
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.0e-230 802.0 510 79.6
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.0e-230 802.0 510 79.4
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.0e-230 802.0 510 79.4
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 3.9e-230 801.6 503 82.7
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 8.7e-230 800.4 511 79.8
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 2.5e-229 798.9 510 79.6
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 3.6e-228 795.0 511 78.9
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 1.8e-227 792.7 472 85.2
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 5.3e-227 791.2 524 76.9
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 8.4e-225 783.9 511 79.3
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 1.6e-223 779.6 556 74.3
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.3e-222 776.5 511 78.3
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.5e-221 773.1 494 79.4
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 1.9e-221 772.7 479 80.6
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 3.3e-221 771.9 510 78.6
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 5.6e-221 771.2 512 81.2
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.6e-220 769.6 510 81.2
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 3.1e-219 765.4 511 76.3
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 7.6e-218 760.8 547 72.4
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.9e-216 756.1 512 76.6
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 9.3e-216 753.8 511 76.5
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.6e-213 743.8 524 75.0
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.6e-213 743.8 524 75.0
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 8.8e-198 694.1 472 77.8
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 5.3e-195 684.9 511 70.6
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 3.8e-193 678.7 506 69.8
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.5e-193 677.9 510 69.8
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 8.5e-193 677.6 413 83.3
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 5.9e-186 654.8 514 63.2
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.5e-184 648.3 506 65.6
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 6.8e-174 614.8 375 83.5
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.5e-170 602.4 514 58.6
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 5.9e-170 601.7 468 67.3
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 4.1e-163 578.9 522 58.4
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 9.1e-163 577.8 364 83.2
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.8e-161 572.4 494 58.7
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 1.5e-160 570.5 365 80.5
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 7.2e-160 568.2 379 76.8
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 1.2e-159 567.4 515 56.5
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 6.1e-151 538.5 499 53.9
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.8e-150 537.0 325 87.1
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 2.0e-149 533.5 494 60.5
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.3e-148 530.8 345 80.6
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 2.3e-137 493.4 307 83.7
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.9e-136 490.3 457 61.5
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.8e-127 459.9 284 83.1
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 5.2e-126 455.7 383 60.1
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.1e-119 433.7 254 84.6
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 3.0e-113 413.3 509 46.4
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 8.7e-105 385.2 235 83.8
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 3.3e-104 383.3 484 44.2
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.1e-103 378.6 386 53.9
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.8e-97 360.9 259 71.8
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 3.3e-96 356.7 525 37.5
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.5e-69 266.5 199 70.9
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.7e-69 265.8 343 46.4
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 1.1e-67 261.9 502 38.0
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 5.0e-60 236.5 142 84.5
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 3.5e-53 213.8 361 40.2
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.7e-53 212.6 312 42.9
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 6.3e-47 193.0 117 78.6
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.0e-44 185.7 206 51.5
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.0e-40 171.4 197 48.7
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 5.6e-35 153.3 171 55.6
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 9.5e-35 152.5 106 74.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.4e-31 139.8 119 58.8
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 3.2e-30 137.5 82 89.0
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 3.0e-20 104.4 156 44.9
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 6.2e-10 70.1 39 84.6
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 8.9e-09 66.2 37 83.8
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 4.4e-08 63.9 53 60.4


User provided reference genes

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