Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 5.0e-134 481.1 241 100.0
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 5.6e-53 211.8 108 98.1
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 7.9e-47 191.4 108 89.8
BolC3t16642H Brassica oleracea HOM05D007866 ORTHO05D003871 3.0e-46 189.5 127 80.3
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 2.4e-43 179.9 108 86.1
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 2.4e-43 179.9 108 86.1
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 2.7e-39 166.4 110 79.1
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 3.7e-36 156.0 109 74.3
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 3.7e-36 156.0 109 74.3
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.4e-35 154.1 109 73.4
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 2.0e-34 150.2 109 71.6
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 1.7e-33 147.1 109 73.4
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 2.0e-29 133.7 109 65.1
BcaC01g04221 Brassica carinata HOM05D009194 ORTHO05D003871 3.0e-22 109.8 83 77.1
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 7.4e-21 105.1 113 55.8
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 2.0e-13 80.5 130 46.2
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 6.3e-12 75.5 40 82.5
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 6.3e-12 75.5 40 82.5
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 6.3e-12 75.5 66 57.6
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 4.1e-11 72.8 63 61.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 5.3e-11 72.4 52 65.4
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 9.1e-11 71.6 102 45.1
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.2e-10 71.2 40 85.0
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.0e-10 70.5 39 76.9
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.0e-10 70.5 39 76.9
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 2.0e-10 70.5 39 76.9
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 3.5e-10 69.7 90 46.7
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 3.5e-10 69.7 76 47.4
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 4.5e-10 69.3 85 48.2
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 5.9e-10 68.9 54 61.1
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 5.9e-10 68.9 117 40.2
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 5.9e-10 68.9 79 55.7
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.0e-09 68.2 55 61.8
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.3e-09 67.8 42 71.4
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.3e-09 67.8 42 71.4
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.3e-09 67.8 42 71.4
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.3e-09 67.8 93 44.1
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.7e-09 67.4 78 43.6
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.7e-09 67.4 43 74.4
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 1.7e-09 67.4 57 57.9
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.2e-09 67.0 107 39.3
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 2.2e-09 67.0 41 63.4
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.2e-09 67.0 75 54.7
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 2.9e-09 66.6 55 58.2
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 2.9e-09 66.6 56 57.1
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 3.8e-09 66.2 79 46.8
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 3.8e-09 66.2 109 42.2
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.8e-09 66.2 109 42.2
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 3.8e-09 66.2 54 57.4
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 5.0e-09 65.9 38 76.3
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 6.5e-09 65.5 91 41.8
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 6.5e-09 65.5 76 44.7
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 6.5e-09 65.5 63 50.8
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 8.5e-09 65.1 60 56.7
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 8.5e-09 65.1 83 44.6
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.1e-08 64.7 85 43.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 1.9e-08 63.9 91 40.7
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.9e-08 63.9 39 76.9
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 2.5e-08 63.5 64 54.7
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.5e-08 63.5 87 43.7
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.2e-08 63.2 84 41.7
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 3.2e-08 63.2 73 52.1
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.2e-08 63.2 41 73.2
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 4.2e-08 62.8 75 52.0
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 5.5e-08 62.4 68 45.6
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 7.2e-08 62.0 100 42.0
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 9.4e-08 61.6 51 60.8
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 9.4e-08 61.6 55 60.0
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 9.4e-08 61.6 63 49.2
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 9.4e-08 61.6 52 63.5
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 1.2e-07 61.2 44 70.5
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 1.2e-07 61.2 105 39.0
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.6e-07 60.8 45 71.1
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.6e-07 60.8 87 41.4
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.6e-07 60.8 60 51.7
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 1.6e-07 60.8 59 52.5
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.6e-07 60.8 93 38.7
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 2.1e-07 60.5 36 75.0
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.1e-07 60.5 36 69.4
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 2.1e-07 60.5 77 45.5
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 2.1e-07 60.5 73 45.2
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 2.1e-07 60.5 69 52.2
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.1e-07 60.5 65 44.6
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 2.1e-07 60.5 75 48.0
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 2.7e-07 60.1 74 44.6
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 2.7e-07 60.1 76 43.4
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 3.6e-07 59.7 72 45.8
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 3.6e-07 59.7 44 65.9
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 3.6e-07 59.7 60 51.7
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 3.6e-07 59.7 108 39.8
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 4.7e-07 59.3 60 53.3
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 4.7e-07 59.3 71 52.1
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 4.7e-07 59.3 66 51.5
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 4.7e-07 59.3 60 51.7
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 6.1e-07 58.9 91 38.5
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 6.1e-07 58.9 79 43.0
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 6.1e-07 58.9 90 46.7
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 8.0e-07 58.5 74 48.6
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.0e-06 58.2 71 43.7
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.0e-06 58.2 79 43.0
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 1.4e-06 57.8 42 66.7
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.4e-06 57.8 53 58.5
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.8e-06 57.4 50 56.0
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.8e-06 57.4 50 56.0
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 1.8e-06 57.4 58 53.4
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 2.3e-06 57.0 55 54.5
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 2.3e-06 57.0 55 58.2
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 2.3e-06 57.0 60 53.3
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.3e-06 57.0 86 39.5
BraA03t11615Z Brassica rapa HOM05D000282 ORTHO05D021960 3.0e-06 56.6 44 63.6
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.0e-06 56.6 60 51.7
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 3.0e-06 56.6 69 46.4
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 4.0e-06 56.2 69 46.4
Nn2g11287 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.0e-06 56.2 72 34.7
C02p25210 Brassica napus HOM05D020666 ORTHO05D019918 5.2e-06 55.8 34 79.4
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.2e-06 55.8 40 65.0
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.2e-06 55.8 40 65.0
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 5.2e-06 55.8 98 34.7
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 6.8e-06 55.5 106 38.7
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 6.8e-06 55.5 53 54.7
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 6.8e-06 55.5 38 68.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 6.8e-06 55.5 79 43.0
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 8.8e-06 55.1 97 38.1
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 8.8e-06 55.1 55 56.4
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 8.8e-06 55.1 65 44.6
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 8.8e-06 55.1 62 53.2
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.8e-06 55.1 56 48.2


User provided reference genes

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