Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 4.3e-42 174.1 80 100.0
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 8.2e-41 169.9 80 96.2
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 3.3e-34 147.9 80 88.8
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 3.7e-33 144.4 82 84.1
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.3e-25 119.4 81 75.3
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 2.2e-25 118.6 81 74.1
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 2.2e-25 118.6 81 74.1
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 2.2e-25 118.6 81 74.1
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 2.2e-25 118.6 81 74.1
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 6.3e-25 117.1 79 75.9
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 1.4e-24 115.9 81 72.8
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 2.4e-24 115.2 81 71.6
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 2.4e-24 115.2 81 71.6
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.2e-23 112.8 79 73.4
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 3.4e-23 111.3 80 71.2
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 2.9e-22 108.2 79 70.9
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 2.9e-22 108.2 79 70.9
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 2.9e-22 108.2 80 71.2
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.8e-22 107.8 80 72.5
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 5.0e-22 107.5 79 69.6
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 5.0e-22 107.5 79 69.6
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.4e-21 105.9 80 71.2
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 1.9e-21 105.5 78 70.5
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 3.2e-21 104.8 79 68.4
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 4.2e-21 104.4 79 68.4
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 5.5e-21 104.0 79 68.4
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 5.5e-21 104.0 79 68.4
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.2e-20 102.8 79 68.4
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.2e-20 102.8 79 68.4
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 1.2e-20 102.8 78 67.9
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.7e-20 101.7 81 65.4
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 1.8e-19 99.0 79 67.1
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 6.7e-19 97.1 79 64.6
BcaC09g48081 Brassica carinata HOM05D002269 ORTHO05D002421 7.4e-18 93.6 53 79.2
BolC1t05454H Brassica oleracea HOM05D002269 ORTHO05D002421 7.4e-18 93.6 53 79.2
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 7.4e-18 93.6 80 62.5
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 1.7e-17 92.4 72 69.4
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 1.7e-17 92.4 72 69.4
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 1.7e-17 92.4 72 69.4
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 3.7e-17 91.3 72 68.1
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 3.1e-16 88.2 80 62.5
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 2.6e-15 85.1 80 58.8
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 3.5e-15 84.7 79 58.2
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 2.9e-14 81.6 80 60.0
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.9e-13 79.0 80 57.5
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.2e-13 78.2 80 57.5
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 5.5e-13 77.4 80 57.5
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 7.2e-13 77.0 80 57.5
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 9.4e-13 76.6 73 54.8
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.1e-12 75.5 78 56.4
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.0e-12 73.6 79 51.9
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 8.0e-12 73.6 80 56.2
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 4.0e-11 71.2 81 51.9
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.2e-11 70.9 81 55.6
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 6.7e-11 70.5 82 52.4
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 6.7e-11 70.5 81 55.6
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 8.8e-11 70.1 84 48.8
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.5e-10 69.3 79 51.9
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.5e-10 69.3 82 50.0
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.5e-10 69.3 82 50.0
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 2.6e-10 68.6 82 50.0
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 3.3e-10 68.2 83 54.2
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 5.7e-10 67.4 79 49.4
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 5.7e-10 67.4 81 53.1
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 5.7e-10 67.4 81 53.1
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 5.7e-10 67.4 81 50.6
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 5.7e-10 67.4 81 54.3
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.5e-10 67.0 82 47.6
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 7.5e-10 67.0 79 50.6
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 9.7e-10 66.6 80 52.5
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 1.3e-09 66.2 82 51.2
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 1.3e-09 66.2 79 49.4
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.3e-09 66.2 84 51.2
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.3e-09 66.2 79 49.4
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 2.2e-09 65.5 71 54.9
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.2e-09 65.5 82 50.0
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 2.8e-09 65.1 83 47.0
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 2.8e-09 65.1 79 53.2
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 3.7e-09 64.7 80 50.0
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 3.7e-09 64.7 80 50.0
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.7e-09 64.7 81 45.7
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.8e-09 64.3 85 48.2
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 4.8e-09 64.3 79 49.4
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 4.8e-09 64.3 81 45.7
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 6.3e-09 63.9 79 49.4
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 6.3e-09 63.9 79 49.4
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 8.2e-09 63.5 79 51.9
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.1e-08 63.2 79 48.1
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.1e-08 63.2 86 45.3
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.1e-08 63.2 82 47.6
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 80 48.8
Migut.J00330 Erythranthe guttata HOM05D002160 ORTHO05D002012 1.4e-08 62.8 81 44.4
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 1.4e-08 62.8 55 60.0
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.8e-08 62.4 79 48.1
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.4e-08 62.0 81 49.4
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.4e-08 62.0 80 48.8
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 2.4e-08 62.0 84 48.8
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.4e-08 62.0 79 49.4
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.4e-08 62.0 79 46.8
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.4e-08 62.0 79 46.8
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 3.1e-08 61.6 86 45.3
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 4.1e-08 61.2 83 49.4
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.1e-08 61.2 80 51.2
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 5.3e-08 60.8 80 48.8
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 5.3e-08 60.8 80 48.8
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 5.3e-08 60.8 81 50.6
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 5.3e-08 60.8 83 47.0
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.3e-08 60.8 79 46.8
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 7.0e-08 60.5 82 48.8
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 7.0e-08 60.5 80 46.2
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 7.0e-08 60.5 80 48.8
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 7.0e-08 60.5 81 51.9
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 9.1e-08 60.1 81 48.1
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 9.1e-08 60.1 79 50.6
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 9.1e-08 60.1 80 47.5
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 9.1e-08 60.1 80 48.8
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.2e-07 59.7 72 44.4
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.2e-07 59.7 72 44.4
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.2e-07 59.7 77 49.4
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 1.2e-07 59.7 81 46.9
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 1.2e-07 59.7 82 48.8
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 1.6e-07 59.3 58 50.0
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.6e-07 59.3 80 50.0
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.6e-07 59.3 79 49.4
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 2.0e-07 58.9 53 52.8
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.0e-07 58.9 79 50.6
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.7e-07 58.5 81 44.4
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.7e-07 58.5 79 48.1
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 2.7e-07 58.5 79 45.6
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 3.5e-07 58.2 54 55.6
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 3.5e-07 58.2 79 43.0
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.5e-07 58.2 72 44.4
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.5e-07 58.2 79 46.8
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 4.5e-07 57.8 54 55.6
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.5e-07 57.8 79 50.6
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.9e-07 57.4 79 45.6
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 5.9e-07 57.4 79 48.1
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.9e-07 57.4 80 47.5
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 5.9e-07 57.4 79 48.1
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 1.0e-06 56.6 83 44.6
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.3e-06 56.2 81 48.1
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 1.3e-06 56.2 53 50.9
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.7e-06 55.8 81 43.2
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 48.1
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 48.1
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.7e-06 55.8 82 45.1
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 79 45.6
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 72 43.1
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.2e-06 55.5 79 48.1
HanXRQChr08g0227151 Helianthus annuus HOM05D002160 ORTHO05D002012 2.2e-06 55.5 78 41.0
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 2.9e-06 55.1 80 43.8
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 2.9e-06 55.1 80 45.0
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.9e-06 55.1 85 43.5
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 2.9e-06 55.1 80 45.0
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 2.9e-06 55.1 80 45.0
SalBow3G1981 Salvia bowleyana HOM05D002160 ORTHO05D002012 2.9e-06 55.1 75 48.0
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 3.8e-06 54.7 56 48.2
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 3.8e-06 54.7 81 46.9
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 3.8e-06 54.7 79 43.0
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 5.0e-06 54.3 82 43.9
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 5.0e-06 54.3 81 44.4
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 5.0e-06 54.3 81 45.7
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 6.5e-06 53.9 79 45.6
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 6.5e-06 53.9 78 42.3
Zm00001eb124380 Zea mays HOM05D002160 ORTHO05D002012 6.5e-06 53.9 66 47.0
COL.COLO4_19168 Corchorus olitorius HOM05D002160 ORTHO05D002012 8.5e-06 53.5 55 47.3
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 8.5e-06 53.5 79 45.6
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 8.5e-06 53.5 85 47.1
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 8.5e-06 53.5 78 44.9


User provided reference genes

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