Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 2.1e-54 215.3 99 100.0
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 4.0e-45 184.5 85 100.0
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.2e-41 172.9 137 65.7
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 4.9e-35 151.0 140 58.6
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.4e-34 149.4 135 59.3
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.4e-34 149.4 135 59.3
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.4e-34 149.4 135 59.3
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.4e-34 149.4 135 59.3
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 6.6e-32 140.6 137 55.5
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 3.3e-31 138.3 136 57.4
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 4.3e-31 137.9 123 59.3
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 3.6e-30 134.8 127 58.3
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 3.6e-30 134.8 123 58.5
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 3.6e-30 134.8 123 58.5
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 4.7e-30 134.4 123 58.5
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 4.7e-30 134.4 123 58.5
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 4.7e-30 134.4 123 58.5
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.0e-29 133.3 123 57.7
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.0e-29 133.3 123 57.7
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 2.6e-28 128.6 119 58.0
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.6e-28 128.6 119 58.0
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 5.7e-28 127.5 123 56.1
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 5.7e-28 127.5 123 56.1
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 9.8e-28 126.7 123 56.1
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 1.3e-27 126.3 123 54.5
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.2e-27 125.6 125 54.4
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 2.9e-27 125.2 123 55.3
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-27 125.2 123 55.3
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-27 125.2 123 55.3
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.9e-27 125.2 125 53.6
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 2.9e-27 125.2 123 55.3
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 3.7e-27 124.8 123 55.3
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 3.7e-27 124.8 123 55.3
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 3.7e-27 124.8 123 56.1
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 3.7e-27 124.8 123 55.3
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 4.9e-27 124.4 123 55.3
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 4.9e-27 124.4 123 55.3
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 6.4e-27 124.0 123 54.5
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 8.3e-27 123.6 123 53.7
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 8.3e-27 123.6 123 55.3
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.3e-27 123.6 123 54.5
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.1e-26 123.2 123 54.5
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.1e-26 123.2 123 54.5
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.1e-26 123.2 123 53.7
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.1e-26 123.2 123 53.7
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.4e-26 122.9 123 55.3
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.4e-26 122.9 123 54.5
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.4e-26 122.9 123 54.5
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.8e-26 122.5 123 54.5
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.4e-26 122.1 123 54.5
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 2.4e-26 122.1 123 54.5
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.4e-26 122.1 121 54.5
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.2e-26 121.7 123 53.7
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 3.2e-26 121.7 107 57.0
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 3.2e-26 121.7 123 53.7
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.2e-26 121.7 123 53.7
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 53.7
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 4.1e-26 121.3 154 46.8
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 54.5
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 52.8
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 54.5
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 52.8
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 54.5
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 52.8
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 4.1e-26 121.3 123 53.7
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 4.1e-26 121.3 107 57.0
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 4.1e-26 121.3 107 57.0
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 5.4e-26 120.9 107 56.1
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 5.4e-26 120.9 106 58.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 7.0e-26 120.6 123 53.7
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 7.0e-26 120.6 123 53.7
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 9.2e-26 120.2 123 53.7
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 9.2e-26 120.2 126 52.4
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 9.2e-26 120.2 123 53.7
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 9.2e-26 120.2 123 52.8
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 9.2e-26 120.2 123 52.8
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.2e-25 119.8 123 53.7
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 1.2e-25 119.8 123 53.7
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.2e-25 119.8 123 53.7
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.2e-25 119.8 123 53.7
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 1.6e-25 119.4 107 56.1
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.6e-25 119.4 107 56.1
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 1.6e-25 119.4 107 56.1
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 1.6e-25 119.4 107 56.1
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.6e-25 119.4 107 56.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.6e-25 119.4 123 51.2
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 2.7e-25 118.6 107 56.1
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 2.7e-25 118.6 123 52.8
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 2.7e-25 118.6 107 55.1
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 2.7e-25 118.6 123 52.0
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.5e-25 118.2 123 51.2
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 3.5e-25 118.2 107 55.1
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 3.5e-25 118.2 107 55.1
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 3.5e-25 118.2 106 55.7
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 3.5e-25 118.2 124 50.8
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 3.5e-25 118.2 123 52.8
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 4.6e-25 117.9 71 78.9
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 4.6e-25 117.9 106 55.7
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.9e-25 117.5 123 52.0
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 5.9e-25 117.5 107 56.1
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 5.9e-25 117.5 122 53.3
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.9e-25 117.5 122 53.3
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.9e-25 117.5 122 53.3
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.9e-25 117.5 122 53.3
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 5.9e-25 117.5 123 52.0
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 7.8e-25 117.1 121 52.1
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.3e-24 116.3 118 53.4
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.3e-24 115.5 123 51.2
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.0e-24 115.2 123 52.0
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.0e-24 115.2 106 55.7
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.0e-24 115.2 106 55.7
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 3.0e-24 115.2 123 51.2
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 3.9e-24 114.8 107 55.1
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.9e-24 114.8 123 52.0
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.9e-24 114.8 123 52.0
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 3.9e-24 114.8 123 51.2
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 6.6e-24 114.0 54 92.6
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 8.6e-24 113.6 123 50.4
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.1e-23 113.2 123 49.6
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 1.5e-23 112.8 106 52.8
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 1.5e-23 112.8 106 52.8
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.5e-23 112.1 88 65.9
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.3e-23 111.7 85 67.1
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 4.3e-23 111.3 117 53.0
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 9.5e-23 110.2 88 65.9
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 9.5e-23 110.2 115 50.4
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.6e-22 109.4 104 54.8
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 2.1e-22 109.0 123 50.4
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.1e-22 109.0 70 75.7
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.8e-22 108.6 88 63.6
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.6e-22 108.2 120 47.5
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 3.6e-22 108.2 70 74.3
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 6.2e-22 107.5 121 47.1
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.1e-21 106.7 120 46.7
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.1e-21 106.7 107 50.5
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 1.4e-21 106.3 106 50.9
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 4.0e-21 104.8 70 71.4
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.6e-20 102.1 70 72.9
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 3.4e-20 101.7 54 83.3
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 4.4e-20 101.3 54 81.5
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 9.8e-20 100.1 114 49.1
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.3e-19 99.8 70 71.4
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 8.3e-19 97.1 168 38.1
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-16 89.7 160 36.9
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.3e-16 89.0 102 50.0
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 2.1e-14 82.4 60 68.3
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.1e-14 82.4 89 50.6
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 7.5e-12 73.9 94 42.6
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 3.7e-11 71.6 83 48.2
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 6.4e-11 70.9 87 44.8
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 1.1e-10 70.1 104 40.4
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.4e-10 69.7 82 47.6
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.2e-10 68.6 82 46.3
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 3.2e-10 68.6 82 46.3
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 9.2e-10 67.0 82 46.3
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 9.2e-10 67.0 82 46.3
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 9.2e-10 67.0 85 44.7
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.2e-09 66.6 83 44.6
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 2.7e-09 65.5 82 45.1
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.3e-08 62.4 85 43.5
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 6.6e-08 60.8 76 46.1
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 2.5e-07 58.9 110 35.5
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 3.3e-07 58.5 35 77.1
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 2.1e-06 55.8 29 86.2


User provided reference genes

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