Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 7.7e-79 297.0 140 100.0
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 2.5e-69 265.4 149 85.9
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 3.3e-69 265.0 185 75.1
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 1.1e-64 250.0 173 74.6
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 1.9e-45 186.0 113 82.3
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 4.5e-26 121.7 63 87.3
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 6.4e-25 117.9 114 55.3
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 1.1e-24 117.1 65 83.1
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.8e-22 109.8 66 78.8
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.8e-22 109.8 184 41.3
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 1.8e-22 109.8 184 41.3
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 3.0e-22 109.0 66 77.3
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 3.9e-22 108.6 184 40.8
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 3.9e-22 108.6 66 77.3
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 5.1e-22 108.2 66 77.3
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 5.1e-22 108.2 66 77.3
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 5.1e-22 108.2 66 77.3
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 5.1e-22 108.2 66 77.3
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 5.1e-22 108.2 66 75.8
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 5.1e-22 108.2 66 77.3
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 4.8e-20 101.7 66 71.2
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.8e-20 101.7 66 71.2
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 8.1e-20 100.9 66 69.7
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.8e-19 99.8 66 68.2
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 2.4e-19 99.4 66 66.7
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 2.4e-19 99.4 66 66.7
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 2.4e-19 99.4 66 66.7
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 2.4e-19 99.4 66 69.7
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 2.4e-19 99.4 66 68.2
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 3.1e-19 99.0 66 69.7
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 3.1e-19 99.0 66 68.2
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.1e-19 99.0 66 68.2
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.1e-19 99.0 66 69.7
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 4.0e-19 98.6 66 68.2
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 4.0e-19 98.6 66 68.2
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 4.0e-19 98.6 66 68.2
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 5.3e-19 98.2 66 68.2
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 5.3e-19 98.2 66 68.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 6.9e-19 97.8 66 68.2
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 6.9e-19 97.8 66 66.7
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 6.9e-19 97.8 66 68.2
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 6.9e-19 97.8 66 66.7
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 9.0e-19 97.4 66 65.2
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 9.0e-19 97.4 66 66.7
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 9.0e-19 97.4 63 69.8
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 1.2e-18 97.1 66 66.7
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.2e-18 97.1 66 68.2
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.2e-18 97.1 66 65.2
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.5e-18 96.7 66 63.6
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.5e-18 96.7 58 72.4
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.5e-18 96.7 66 65.2
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.5e-18 96.7 66 68.2
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.5e-18 96.7 63 68.3
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 2.0e-18 96.3 66 65.2
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 2.0e-18 96.3 58 70.7
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 2.6e-18 95.9 66 65.2
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 2.6e-18 95.9 66 65.2
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 2.6e-18 95.9 66 65.2
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 4.5e-18 95.1 66 63.6
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 4.5e-18 95.1 58 69.0
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 4.5e-18 95.1 58 70.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 4.5e-18 95.1 66 63.6
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 4.5e-18 95.1 58 72.4
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 4.5e-18 95.1 66 65.2
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 4.5e-18 95.1 66 65.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 4.5e-18 95.1 66 65.2
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.8e-18 94.7 66 65.2
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.8e-18 94.7 66 65.2
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 5.8e-18 94.7 66 63.6
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 5.8e-18 94.7 66 63.6
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 5.8e-18 94.7 66 66.7
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 5.8e-18 94.7 66 65.2
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 5.8e-18 94.7 66 65.2
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 7.6e-18 94.4 41 100.0
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 7.6e-18 94.4 66 65.2
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.6e-18 94.4 66 63.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.6e-18 94.4 66 63.6
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.6e-18 94.4 66 63.6
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 7.6e-18 94.4 66 65.2
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.0e-17 94.0 66 63.6
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.0e-17 94.0 58 69.0
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 1.0e-17 94.0 66 62.1
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.0e-17 94.0 66 63.6
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.0e-17 94.0 66 63.6
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.0e-17 94.0 66 66.7
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.0e-17 94.0 58 70.7
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-17 93.6 66 62.1
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.3e-17 93.6 66 63.6
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.3e-17 93.6 66 65.2
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 1.3e-17 93.6 58 67.2
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.7e-17 93.2 58 69.0
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.7e-17 93.2 58 65.5
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.7e-17 93.2 66 62.1
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.2e-17 92.8 58 69.0
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 2.9e-17 92.4 66 62.1
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.8e-17 92.0 66 62.1
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 3.8e-17 92.0 66 62.1
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 4.9e-17 91.7 73 61.6
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 6.5e-17 91.3 66 60.6
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 8.4e-17 90.9 78 62.8
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 8.4e-17 90.9 58 63.8
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 1.1e-16 90.5 66 60.6
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.4e-16 90.1 66 60.6
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.9e-16 89.7 66 59.1
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 2.5e-16 89.4 66 65.2
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 2.5e-16 89.4 58 65.5
C09p36290 Brassica napus HOM05D003391 ORTHO05D040219 3.2e-16 89.0 78 61.5
BolC9t56466H Brassica oleracea HOM05D003391 ORTHO05D040219 3.2e-16 89.0 78 61.5
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 3.2e-16 89.0 78 61.5
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 3.2e-16 89.0 75 57.3
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 4.2e-16 88.6 66 62.1
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 5.5e-16 88.2 66 57.6
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.1e-16 87.8 66 59.1
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 9.3e-16 87.4 63 57.1
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 9.3e-16 87.4 66 57.6
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.6e-15 86.7 66 57.6
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.6e-15 86.7 66 57.6
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 2.1e-15 86.3 66 62.1
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.0e-14 84.0 66 57.6
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 5.1e-14 81.6 66 56.1
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 6.7e-14 81.3 66 53.0
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 6.7e-14 81.3 66 53.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 8.7e-14 80.9 66 56.1
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.5e-13 79.3 66 53.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 4.8e-12 75.1 61 62.3
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 8.2e-12 74.3 66 51.5
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 1.8e-11 73.2 66 48.5
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 3.1e-11 72.4 66 50.0
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 3.1e-11 72.4 66 50.0
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.2e-10 70.5 93 40.9
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.2e-10 70.5 58 51.7
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.5e-09 64.3 62 50.0
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 2.5e-08 62.8 66 40.9
C05p17220 Brassica napus HOM05D022816 ORTHO05D013781 4.2e-08 62.0 33 90.9
BolC2t08517H Brassica oleracea HOM05D022816 ORTHO05D013781 5.5e-08 61.6 33 87.9
C07p36010 Brassica napus HOM05D022816 ORTHO05D013781 7.9e-07 57.8 33 84.8
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 2.3e-06 56.2 33 69.7
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 5.1e-06 55.1 32 71.9


User provided reference genes

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