Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 9.2e-63 243.4 127 100.0
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 9.2e-63 243.4 127 100.0
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 9.2e-63 243.4 127 100.0
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 9.2e-63 243.4 127 100.0
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 8.1e-59 230.3 128 96.1
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 8.1e-59 230.3 128 96.1
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 8.9e-58 226.9 127 93.7
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 4.4e-57 224.6 127 93.7
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 9.0e-50 200.3 127 83.5
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 1.9e-47 192.6 125 80.0
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 3.5e-46 188.3 123 78.0
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 1.3e-45 186.4 127 78.7
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 3.9e-45 184.9 128 79.7
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 5.1e-45 184.5 127 78.0
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 6.6e-45 184.1 123 74.8
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 6.6e-45 184.1 123 74.8
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 6.6e-45 184.1 123 74.8
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 6.6e-45 184.1 117 82.1
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 8.7e-45 183.7 123 74.8
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.1e-44 183.3 115 80.9
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.1e-44 183.3 115 80.9
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.1e-44 183.3 115 80.9
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 1.1e-44 183.3 114 79.8
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 1.1e-44 183.3 112 82.1
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.5e-44 183.0 129 78.3
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 1.9e-44 182.6 129 78.3
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 1.9e-44 182.6 124 79.0
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.3e-44 181.4 123 74.0
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 4.3e-44 181.4 116 81.9
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 4.3e-44 181.4 112 83.0
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 5.6e-44 181.0 114 81.6
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 1.3e-43 179.9 128 75.0
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.3e-43 179.9 111 83.8
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 1.3e-43 179.9 125 76.0
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 2.1e-43 179.1 127 75.6
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 2.1e-43 179.1 114 80.7
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.1e-43 179.1 128 75.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 8.1e-43 177.2 127 76.4
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 1.1e-42 176.8 127 74.8
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 1.4e-42 176.4 114 79.8
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 1.8e-42 176.0 117 80.3
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.4e-42 175.6 114 78.9
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.1e-42 175.3 115 77.4
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 3.1e-42 175.3 111 79.3
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 5.3e-42 174.5 115 76.5
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 1.2e-41 173.3 109 79.8
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 1.5e-41 172.9 110 78.2
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 3.4e-41 171.8 115 78.3
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 3.4e-41 171.8 115 74.8
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.4e-41 171.8 115 75.7
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 4.5e-41 171.4 111 79.3
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 1.3e-40 169.9 111 78.4
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 1.7e-40 169.5 114 76.3
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 2.2e-40 169.1 127 70.1
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 3.8e-40 168.3 111 76.6
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 4.9e-40 167.9 127 68.5
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 4.9e-40 167.9 107 79.4
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 6.4e-40 167.5 111 77.5
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 8.4e-40 167.2 111 80.2
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.4e-39 166.4 109 78.0
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.9e-39 166.0 111 75.7
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 2.4e-39 165.6 111 75.7
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 4.2e-39 164.9 111 74.8
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 5.4e-39 164.5 111 77.5
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 7.1e-39 164.1 107 78.5
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 7.1e-39 164.1 111 78.4
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 9.3e-39 163.7 96 88.5
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 4.6e-38 161.4 111 78.4
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 1.3e-37 159.8 113 72.6
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 3.9e-37 158.3 94 84.0
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 8.7e-37 157.1 109 72.5
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 8.7e-37 157.1 113 72.6
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 2.5e-36 155.6 113 70.8
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 4.3e-36 154.8 96 84.4
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 1.3e-35 153.3 111 72.1
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 1.6e-35 152.9 107 72.0
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 1.6e-35 152.9 107 72.0
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 2.1e-35 152.5 128 66.4
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 4.8e-35 151.4 111 70.3
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 6.2e-35 151.0 112 73.2
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 6.2e-35 151.0 128 65.6
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.1e-34 150.2 125 63.2
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.1e-34 150.2 116 70.7
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.1e-34 150.2 116 70.7
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 3.1e-34 148.7 113 65.5
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 3.1e-34 148.7 114 64.9
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 9.0e-34 147.1 96 78.1
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.5e-33 146.4 114 67.5
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 2.0e-33 146.0 119 64.7
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 3.4e-33 145.2 112 68.8
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 3.4e-33 145.2 111 65.8
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 5.8e-33 144.4 119 64.7
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 7.6e-33 144.1 109 67.0
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 1.7e-32 142.9 96 79.2
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 2.9e-32 142.1 112 69.6
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 1.1e-31 140.2 114 67.5
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 5.5e-31 137.9 112 68.8
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 2.7e-30 135.6 107 66.4
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 1.0e-29 133.7 99 73.7
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.3e-29 133.3 113 62.8
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 2.3e-29 132.5 99 72.7
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 2.3e-29 132.5 120 54.2
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 2.5e-28 129.0 113 60.2
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 9.6e-28 127.1 114 59.6
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 1.8e-26 122.9 115 60.9
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 2.0e-25 119.4 120 55.0
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 2.6e-25 119.0 82 74.4
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 3.4e-25 118.6 117 53.8
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 5.8e-25 117.9 88 70.5
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.2e-24 115.9 92 66.3
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.2e-24 115.9 92 66.3
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 7.1e-23 110.9 97 62.9
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 3.5e-22 108.6 111 55.0
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 1.0e-21 107.1 113 53.1
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 1.3e-21 106.7 118 50.0
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 6.9e-18 94.4 127 45.7
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.9e-15 86.3 96 51.0
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 2.4e-10 69.3 112 36.6
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 4.5e-09 65.1 46 67.4
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 2.1e-06 56.2 64 39.1
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 2.7e-06 55.8 88 38.6


User provided reference genes

Program Settings