Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 8.9e-82 307.0 167 100.0
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 1.9e-79 299.3 173 96.0
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 6.4e-56 221.1 200 70.0
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 1.1e-55 220.3 200 66.5
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 3.2e-55 218.8 200 69.0
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 1.2e-54 216.9 200 70.0
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 1.2e-54 216.9 200 70.0
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 1.1e-52 210.3 183 70.5
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 1.3e-51 206.8 196 65.3
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 4.8e-51 204.9 203 63.1
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 2.0e-49 199.5 196 66.3
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 1.0e-48 197.2 196 65.8
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 1.4e-47 193.4 202 63.9
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 3.0e-45 185.7 203 62.1
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 5.7e-44 181.4 190 67.4
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 3.7e-43 178.7 190 66.3
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 2.0e-41 172.9 201 52.2
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 2.9e-24 115.9 196 44.9
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 8.0e-22 107.8 202 40.6
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 1.4e-21 107.1 184 41.8
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 1.8e-21 106.7 210 40.5
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 1.8e-21 106.7 211 37.9
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 3.9e-21 105.5 183 44.3
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 2.0e-20 103.2 210 41.0
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 5.7e-20 101.7 208 38.0
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 9.7e-20 100.9 206 38.8
BraA03t12668Z Brassica rapa HOM05D007152 ORTHO05D008912 1.4e-18 97.1 48 93.8
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 2.4e-18 96.3 183 43.7
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 5.3e-18 95.1 184 37.5
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 7.0e-18 94.7 188 39.9
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 1.6e-17 93.6 190 39.5
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 5.9e-17 91.7 208 38.5
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 5.9e-17 91.7 189 36.5
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.0e-16 90.9 194 36.6
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 1.0e-16 90.9 194 38.1
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 2.9e-16 89.4 160 43.1
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 3.8e-16 89.0 198 38.4
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 3.8e-16 89.0 189 36.0
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 6.5e-16 88.2 198 38.9
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 1.5e-15 87.0 200 36.5
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 1.5e-15 87.0 190 35.8
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 1.9e-15 86.7 191 36.1
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 2.5e-15 86.3 210 38.6
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 4.2e-15 85.5 201 36.8
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 4.2e-15 85.5 180 37.8
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 5.5e-15 85.1 198 34.3
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 7.2e-15 84.7 180 40.6
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 7.2e-15 84.7 196 34.7
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 7.2e-15 84.7 214 36.9
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 9.4e-15 84.3 198 37.4
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 4.7e-14 82.0 193 34.2
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 6.1e-14 81.6 193 34.2
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 2.3e-13 79.7 185 34.6
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 4.0e-13 79.0 184 36.4
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 4.0e-13 79.0 183 38.8
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 4.0e-13 79.0 175 41.1
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 5.2e-13 78.6 189 33.3
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 8.8e-13 77.8 168 35.7
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 8.8e-13 77.8 203 35.5
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 1.2e-12 77.4 188 37.8
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 1.5e-12 77.0 201 35.8
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 2.0e-12 76.6 198 38.9
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 2.6e-12 76.3 177 35.6
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 9.7e-12 74.3 190 35.8
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 1.3e-11 73.9 160 39.4
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 1.7e-11 73.6 190 34.2
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.7e-11 73.6 198 35.9
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 2.2e-11 73.2 173 38.7
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 8.2e-11 71.2 211 33.6
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 1.1e-10 70.9 219 31.1
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 1.8e-10 70.1 131 42.7
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 2.4e-10 69.7 203 36.9
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.4e-10 69.7 203 36.9
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 3.1e-10 69.3 203 36.9
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 7.0e-10 68.2 171 31.0
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 1.6e-09 67.0 183 35.0
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.6e-09 67.0 195 37.4
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 3.5e-09 65.9 58 55.2
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 4.5e-09 65.5 165 34.5
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 4.5e-09 65.5 166 38.0
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 4.5e-09 65.5 163 39.3
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 5.9e-09 65.1 183 34.4
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 7.7e-09 64.7 195 34.9
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 1.7e-08 63.5 63 55.6
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 2.2e-08 63.2 146 45.9
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 2.9e-08 62.8 174 36.2
ECA240G1188 Erigeron canadensis HOM05D007152 ORTHO05D008912 5.0e-08 62.0 113 39.8
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 5.0e-08 62.0 43 69.8
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 5.0e-08 62.0 162 35.8
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 6.5e-08 61.6 43 67.4
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 1.1e-07 60.8 60 55.0
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 1.5e-07 60.5 188 37.2
Dinv28193 Davidia involucrata HOM05D007152 ORTHO05D008912 3.2e-07 59.3 34 70.6
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 4.2e-07 58.9 183 32.8
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 4.2e-07 58.9 154 29.2
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 5.5e-07 58.5 102 43.1
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 1.2e-06 57.4 40 60.0
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 2.1e-06 56.6 123 36.6
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 2.7e-06 56.2 135 43.0
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 6.1e-06 55.1 67 44.8


User provided reference genes

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