Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p42240 Brassica napus HOM05D003714 ORTHO05D004379 1.7e-45 185.7 93 100.0
BolC6t37008H Brassica oleracea HOM05D003714 ORTHO05D004379 1.1e-41 172.9 90 93.3
BcaC02g10354 Brassica carinata HOM05D003714 ORTHO05D004379 1.9e-41 172.2 90 93.3
BcaB05g22662 Brassica carinata HOM05D003714 ORTHO05D004379 2.5e-41 171.8 91 95.6
C06p18020 Brassica napus HOM05D003714 ORTHO05D004379 2.5e-41 171.8 90 93.3
BraA08t33776Z Brassica rapa HOM05D003714 ORTHO05D004379 3.3e-41 171.4 90 94.4
BcaC03g13945 Brassica carinata HOM05D003714 ORTHO05D004379 1.6e-40 169.1 91 94.5
C02p11520 Brassica napus HOM05D003714 ORTHO05D004379 1.6e-40 169.1 91 94.5
BraA02t05710Z Brassica rapa HOM05D003714 ORTHO05D004379 1.6e-40 169.1 91 94.5
AL8G37290 Arabidopsis lyrata HOM05D003714 ORTHO05D004379 3.6e-40 167.9 91 93.4
AT5G60700 Arabidopsis thaliana HOM05D003714 ORTHO05D004379 3.6e-40 167.9 91 93.4
Carub.0008s2138 Capsella rubella HOM05D003714 ORTHO05D004379 3.6e-40 167.9 91 93.4
BcaC04g19732 Brassica carinata HOM05D003714 ORTHO05D004379 4.7e-40 167.5 91 93.4
BcaC08g44367 Brassica carinata HOM05D003714 ORTHO05D004379 4.7e-40 167.5 90 92.2
A10p17940 Brassica napus HOM05D003714 ORTHO05D004379 4.7e-40 167.5 91 93.4
C09p53430 Brassica napus HOM05D003714 ORTHO05D004379 4.7e-40 167.5 91 93.4
BolC9t58217H Brassica oleracea HOM05D003714 ORTHO05D004379 4.7e-40 167.5 91 93.4
BcaC07g41150 Brassica carinata HOM05D003714 ORTHO05D004379 6.2e-40 167.2 90 93.3
C08p41470 Brassica napus HOM05D003714 ORTHO05D004379 6.2e-40 167.2 90 93.3
BolC8t51708H Brassica oleracea HOM05D003714 ORTHO05D004379 6.2e-40 167.2 90 93.3
BraA10t43869Z Brassica rapa HOM05D003714 ORTHO05D004379 6.2e-40 167.2 91 92.3
Sp6g22270 Schrenkiella parvula HOM05D003714 ORTHO05D004379 8.0e-40 166.8 92 90.2
BcaB08g36372 Brassica carinata HOM05D003714 ORTHO05D004379 1.0e-39 166.4 91 92.3
BcaC04g20013 Brassica carinata HOM05D003714 ORTHO05D004379 1.0e-39 166.4 90 92.2
BolC2t07227H Brassica oleracea HOM05D003714 ORTHO05D004379 1.0e-39 166.4 90 93.3
Aa31LG1G12660 Aethionema arabicum HOM05D003714 ORTHO05D004379 8.9e-39 163.3 91 91.2
Thhalv10012601m.g Eutrema salsugineum HOM05D003714 ORTHO05D004379 1.5e-38 162.5 91 89.0
CARHR274380 Cardamine hirsuta HOM05D003714 ORTHO05D004379 3.4e-38 161.4 91 89.0
C09p48800 Brassica napus HOM05D000129 ORTHO05D000144 2.0e-35 152.1 83 91.6
BolC9t57727H Brassica oleracea HOM05D000129 ORTHO05D000144 2.0e-35 152.1 83 91.6
Ca_20855_v3 Cicer arietinum L. HOM05D003714 ORTHO05D004379 2.7e-35 151.8 90 83.3
Lalb_Chr01g0004371 Lupinus albus HOM05D003714 ORTHO05D004379 2.3e-34 148.7 92 79.3
CANSAT54G2133 Cannabis sativa HOM05D003714 ORTHO05D004379 3.0e-34 148.3 92 79.3
Manes.11G147100 Manihot esculenta HOM05D003714 ORTHO05D004379 3.0e-34 148.3 90 81.1
Manes.04G019400 Manihot esculenta HOM05D003714 ORTHO05D004379 6.6e-34 147.1 90 81.1
THA.LOC104810862 Tarenaya hassleriana HOM05D003714 ORTHO05D004379 6.6e-34 147.1 91 80.2
TPR.G6161 Trifolium pratense HOM05D003714 ORTHO05D004379 6.6e-34 147.1 90 80.0
Lalb_Chr03g0027461 Lupinus albus HOM05D003714 ORTHO05D004379 8.6e-34 146.7 90 78.9
Medtr4g058760 Medicago truncatula HOM05D003714 ORTHO05D004379 1.1e-33 146.4 90 81.1
FvH4_3g31890 Fragaria vesca HOM05D003714 ORTHO05D004379 3.3e-33 144.8 91 79.1
FAN11G3344 Fragaria x ananassa HOM05D003714 ORTHO05D004379 3.3e-33 144.8 91 79.1
FAN21G0199 Fragaria x ananassa HOM05D003714 ORTHO05D004379 3.3e-33 144.8 91 79.1
QL01p021761 Quercus lobata HOM05D003714 ORTHO05D004379 3.3e-33 144.8 90 83.3
RcHm_v2.0_Chr5g0058661 Rosa chinensis HOM05D003714 ORTHO05D004379 3.3e-33 144.8 91 79.1
Sabra04G0143400 Salix brachista HOM05D003714 ORTHO05D004379 5.6e-33 144.1 90 78.9
GSVIVG01025204001 Vitis vinifera HOM05D003714 ORTHO05D004379 5.6e-33 144.1 92 78.3
Aqoxy1G01219 Aquilegia oxysepala HOM05D003714 ORTHO05D004379 7.3e-33 143.7 91 75.8
Potri.009G010900 Populus trichocarpa HOM05D003714 ORTHO05D004379 7.3e-33 143.7 90 78.9
FAN25G0709 Fragaria x ananassa HOM05D003714 ORTHO05D004379 1.2e-32 142.9 91 78.0
MD11G1138800 Malus domestica HOM05D003714 ORTHO05D004379 1.6e-32 142.5 91 78.0
Phvul.011G080500 Phaseolus vulgaris HOM05D003714 ORTHO05D004379 1.6e-32 142.5 90 78.9
FAN16G2552 Fragaria x ananassa HOM05D003714 ORTHO05D004379 2.1e-32 142.1 91 78.0
Gohir.A03G032400 Gossypium hirsutum HOM05D003714 ORTHO05D004379 2.1e-32 142.1 90 78.9
Lj3g0004216 Lotus japonicus HOM05D003714 ORTHO05D004379 2.8e-32 141.7 90 77.8
Nitab4.5_0010325g0010 Nicotiana tabacum HOM05D003714 ORTHO05D004379 2.8e-32 141.7 92 76.1
MD03G1120400 Malus domestica HOM05D003714 ORTHO05D004379 3.6e-32 141.4 91 76.9
arahy.Tifrunner.gnm1.ann1.8QPZ90 Arachis hypogaea HOM05D003714 ORTHO05D004379 6.2e-32 140.6 90 76.7
Sabra09G0006800 Salix brachista HOM05D003714 ORTHO05D004379 6.2e-32 140.6 90 77.8
VMungo1127G1929 Vigna mungo HOM05D003714 ORTHO05D004379 6.2e-32 140.6 90 77.8
Migut.N02587 Erythranthe guttata HOM05D003714 ORTHO05D004379 8.1e-32 140.2 91 78.0
Glyma.11G145200 Glycine max HOM05D003714 ORTHO05D004379 8.1e-32 140.2 90 75.6
Gohir.D03G136000 Gossypium hirsutum HOM05D003714 ORTHO05D004379 1.1e-31 139.8 90 77.8
Gorai.003G143100 Gossypium raimondii HOM05D003714 ORTHO05D004379 1.1e-31 139.8 90 77.8
Psat7g144800 Pisum sativum HOM05D003714 ORTHO05D004379 1.1e-31 139.8 90 76.7
Prupe.6G103800 Prunus persica HOM05D003714 ORTHO05D004379 1.1e-31 139.8 91 75.8
TWI79G0067 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 1.1e-31 139.8 91 76.9
Solyc06g075100.3 Solanum lycopersicum HOM05D003714 ORTHO05D004379 1.4e-31 139.4 91 74.7
CiPaw.13G115700 Carya illinoinensis HOM05D003714 ORTHO05D004379 1.8e-31 139.0 90 80.0
Ciclev10030090m.g Citrus clementina HOM05D003714 ORTHO05D004379 1.8e-31 139.0 91 75.8
Eucgr.B02513 Eucalyptus grandis HOM05D003714 ORTHO05D004379 1.8e-31 139.0 91 76.9
Glyma.12G076600 Glycine max HOM05D003714 ORTHO05D004379 1.8e-31 139.0 90 75.6
Gohir.D08G216500 Gossypium hirsutum HOM05D003714 ORTHO05D004379 2.3e-31 138.7 90 77.8
Gorai.004G230400 Gossypium raimondii HOM05D003714 ORTHO05D004379 2.3e-31 138.7 90 77.8
TAR633G1536 Trochodendron aralioides HOM05D003714 ORTHO05D004379 2.3e-31 138.7 91 74.7
COL.COLO4_18316 Corchorus olitorius HOM05D003714 ORTHO05D004379 3.1e-31 138.3 90 76.7
Gohir.D05G104100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 3.1e-31 138.3 90 77.8
Gorai.009G108300 Gossypium raimondii HOM05D003714 ORTHO05D004379 3.1e-31 138.3 90 77.8
Sopen06g031520 Solanum pennellii HOM05D003714 ORTHO05D004379 3.1e-31 138.3 91 74.7
Atru.chr3.3608 Acer truncatum HOM05D003714 ORTHO05D004379 4.0e-31 137.9 90 76.7
Potri.004G212000 Populus trichocarpa HOM05D003714 ORTHO05D004379 4.0e-31 137.9 90 77.8
Duzib168G1405 Durio zibethinus HOM05D003714 ORTHO05D004379 6.8e-31 137.1 90 77.8
Gohir.A08G199100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 2.0e-30 135.6 90 75.6
CAN.G1966.3 Capsicum annuum HOM05D003714 ORTHO05D004379 2.6e-30 135.2 91 72.5
ClCG01G013560 Citrullus lanatus HOM05D003714 ORTHO05D004379 3.4e-30 134.8 91 76.9
Haze_23797 Corylus avellana HOM05D003714 ORTHO05D004379 3.4e-30 134.8 90 73.3
Lj3g0001899 Lotus japonicus HOM05D003714 ORTHO05D004379 4.4e-30 134.4 90 74.4
Duzib150G0819 Durio zibethinus HOM05D003714 ORTHO05D004379 5.8e-30 134.0 90 75.6
Peaxi162Scf00029g01511 Petunia axillaris HOM05D003714 ORTHO05D004379 5.8e-30 134.0 91 72.5
Nitab4.5_0000106g0250 Nicotiana tabacum HOM05D003714 ORTHO05D004379 7.5e-30 133.7 92 72.8
Thecc.09G342900 Theobroma cacao HOM05D003714 ORTHO05D004379 7.5e-30 133.7 90 75.6
Gohir.A05G104300 Gossypium hirsutum HOM05D003714 ORTHO05D004379 9.8e-30 133.3 90 76.7
Nitab4.5_0001939g0040 Nicotiana tabacum HOM05D003714 ORTHO05D004379 9.8e-30 133.3 91 74.7
Cc01_g10960 Coffea canephora HOM05D003714 ORTHO05D004379 1.3e-29 132.9 91 74.7
MELO3C004898.2 Cucumis melo HOM05D003714 ORTHO05D004379 1.7e-29 132.5 91 75.8
Lj2C1024T6 Lonicera japonica HOM05D003714 ORTHO05D004379 1.7e-29 132.5 91 75.8
Haze_23798 Corylus avellana HOM05D003714 ORTHO05D004379 2.2e-29 132.1 90 72.2
PGR102G2693 Punica granatum HOM05D003714 ORTHO05D004379 2.2e-29 132.1 90 74.4
PSO339G1383 Papaver somniferum HOM05D003714 ORTHO05D004379 6.4e-29 130.6 91 68.1
PSO384G2520 Papaver somniferum HOM05D003714 ORTHO05D004379 6.4e-29 130.6 91 68.1
ECA238G0686 Erigeron canadensis HOM05D003714 ORTHO05D004379 8.3e-29 130.2 91 71.4
Peaxi162Scf00270g00113 Petunia axillaris HOM05D003714 ORTHO05D004379 8.3e-29 130.2 91 72.5
SalBow3G2648 Salvia bowleyana HOM05D003714 ORTHO05D004379 8.3e-29 130.2 91 73.6
Sopen11g028270 Solanum pennellii HOM05D003714 ORTHO05D004379 8.3e-29 130.2 91 73.6
CAN.G631.39 Capsicum annuum HOM05D003714 ORTHO05D004379 1.1e-28 129.8 91 72.5
CsaV3_1G013950 Cucumis sativus L. HOM05D003714 ORTHO05D004379 1.1e-28 129.8 91 73.6
Lsat_1_v5_gn_2_100500 Lactuca sativa HOM05D003714 ORTHO05D004379 1.1e-28 129.8 91 72.5
HanXRQChr14g0452661 Helianthus annuus HOM05D003714 ORTHO05D004379 1.9e-28 129.0 91 71.4
TWI75G0420 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 2.4e-28 128.6 89 74.2
Nn2g10822 Nelumbo nucifera HOM05D003714 ORTHO05D004379 4.1e-28 127.9 91 69.2
Rhsim01G0215800 Rhododendron simsii HOM05D003714 ORTHO05D004379 4.1e-28 127.9 91 73.6
Hma1.2p1_0307F.1_g119810 Hydrangea macrophylla HOM05D003714 ORTHO05D004379 5.4e-28 127.5 91 72.5
Lj1A202T36 Lonicera japonica HOM05D003714 ORTHO05D004379 7.1e-28 127.1 91 71.4
Solyc11g069560.2 Solanum lycopersicum HOM05D003714 ORTHO05D004379 7.1e-28 127.1 91 72.5
vmacro03207 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 7.1e-28 127.1 91 74.7
AUR62022789 Chenopodium quinoa HOM05D003714 ORTHO05D004379 9.2e-28 126.7 90 74.4
MBI07_g42224_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 9.2e-28 126.7 90 74.4
SGA_v2.0_scaffold180G39648 Striga asiatica HOM05D003714 ORTHO05D004379 9.2e-28 126.7 91 73.6
Ah.01g003010 Amaranthus hybridus HOM05D003714 ORTHO05D004379 1.2e-27 126.3 90 73.3
BcaC06g36081 Brassica carinata HOM05D003714 ORTHO05D004379 1.2e-27 126.3 73 89.0
C07p08060 Brassica napus HOM05D003714 ORTHO05D004379 1.2e-27 126.3 73 89.0
BolC7t41224H Brassica oleracea HOM05D003714 ORTHO05D004379 1.2e-27 126.3 73 89.0
MSTRG.18670 Avicennia marina HOM05D003714 ORTHO05D004379 1.6e-27 125.9 91 71.4
AUR62042199 Chenopodium quinoa HOM05D003714 ORTHO05D004379 1.6e-27 125.9 90 74.4
unitig_27.g25054 Utricularia gibba HOM05D003714 ORTHO05D004379 1.6e-27 125.9 91 71.4
DCAR_022764 Daucus carota HOM05D003714 ORTHO05D004379 2.1e-27 125.6 91 72.5
EL10Ac9g22541 Beta vulgaris HOM05D003714 ORTHO05D004379 4.6e-27 124.4 90 72.2
CDE04G3105 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 4.6e-27 124.4 92 68.5
Sc15g0001490 Simmondsia chinensis HOM05D003714 ORTHO05D004379 6.0e-27 124.0 91 70.3
Actinidia03720 Actinidia chinensis HOM05D003714 ORTHO05D004379 7.8e-27 123.6 91 71.4
CSS0039471 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 7.8e-27 123.6 91 71.4
CSS0046644 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 7.8e-27 123.6 91 71.4
Rhsim13G0095500 Rhododendron simsii HOM05D003714 ORTHO05D004379 7.8e-27 123.6 91 71.4
Sed0011730 Sechium edule HOM05D003714 ORTHO05D004379 1.0e-26 123.2 91 69.2
Actinidia07147 Actinidia chinensis HOM05D003714 ORTHO05D004379 3.0e-26 121.7 90 71.1
unitig_8.g3299 Utricularia gibba HOM05D003714 ORTHO05D004379 3.9e-26 121.3 91 69.2
Migut.D02239 Erythranthe guttata HOM05D003714 ORTHO05D004379 8.6e-26 120.2 89 71.9
SGA_v2.0_scaffold116G32255 Striga asiatica HOM05D003714 ORTHO05D004379 8.6e-26 120.2 90 71.1
MBI10_g19605_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 1.1e-25 119.8 90 72.2
Oeu001285.1 Olea europaea HOM05D003714 ORTHO05D004379 5.6e-25 117.5 87 72.4
HPP92_013379 Vanilla planifolia HOM05D003714 ORTHO05D004379 5.6e-25 117.5 92 65.2
DCAR_018798 Daucus carota HOM05D003714 ORTHO05D004379 7.3e-25 117.1 91 67.0
vmacro14427 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 7.3e-25 117.1 91 68.1
CDE03G0469 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 1.6e-24 115.9 92 63.0
PSO339G1676 Papaver somniferum HOM05D003714 ORTHO05D004379 2.8e-24 115.2 91 67.0
PSO063G6987 Papaver somniferum HOM05D003714 ORTHO05D004379 4.7e-24 114.4 91 65.9
HPP92_025357 Vanilla planifolia HOM05D003714 ORTHO05D004379 2.3e-23 112.1 92 64.1
CDE07G1448 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 3.1e-23 111.7 90 65.6
Zm00001eb258310 Zea mays HOM05D003714 ORTHO05D004379 5.2e-23 110.9 92 65.2
ATR0048G003 Amborella trichopoda HOM05D003714 ORTHO05D004379 6.8e-23 110.5 91 64.8
Pp3c3_5960 Physcomitrium patens HOM05D003714 ORTHO05D004379 1.2e-22 109.8 90 64.4
SEGI_02314 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 1.5e-22 109.4 90 64.4
SEGI_21871 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 1.5e-22 109.4 90 64.4
Os02g0806500 Oryza sativa ssp. japonica HOM05D003714 ORTHO05D004379 4.4e-22 107.8 90 64.4
Mapoly0151s0026 Marchantia polymorpha HOM05D003714 ORTHO05D004379 1.3e-21 106.3 90 62.2
unitig_8.g3004 Utricularia gibba HOM05D003714 ORTHO05D004379 1.7e-21 105.9 91 61.5
SEGI_28974 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 1.4e-20 102.8 92 57.6
SEGI_03824 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 7.1e-20 100.5 90 58.9
SMO165G0075 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 9.2e-20 100.1 92 58.7
SMO118G0436 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 1.6e-19 99.4 90 60.0
Pp3c3_14800 Physcomitrium patens HOM05D003714 ORTHO05D004379 1.3e-18 96.3 86 59.3
Pp3c4_16750 Physcomitrium patens HOM05D003714 ORTHO05D004379 1.3e-18 96.3 92 57.6
Actinidia24112 Actinidia chinensis HOM05D000450 ORTHO05D000327 9.9e-14 80.1 76 57.9
AagrBONN_evm.TU.Sc2ySwM_117.2800 Anthoceros agrestis HOM05D003714 ORTHO05D004379 6.4e-13 77.4 90 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1662 Anthoceros agrestis HOM05D003714 ORTHO05D004379 2.4e-12 75.5 90 47.8
Dinv32729 Davidia involucrata HOM05D003714 ORTHO05D004379 5.6e-09 64.3 68 51.5


User provided reference genes

Program Settings