Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 6.4e-141 504.2 280 100.0
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 6.4e-141 504.2 280 100.0
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 7.1e-132 474.2 270 97.0
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 6.6e-122 441.0 281 90.7
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 3.8e-117 425.2 271 89.7
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.6e-96 356.7 278 80.9
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 7.9e-91 337.8 276 75.4
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.0e-78 296.6 277 69.3
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 3.3e-73 279.3 283 66.1
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.4e-73 278.9 282 66.7
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 5.9e-70 268.5 283 66.1
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.7e-69 266.9 284 66.2
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.5e-60 237.3 293 58.0
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.9e-24 116.7 305 39.3
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.9e-23 114.0 292 31.5
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 5.4e-23 112.5 234 37.6
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 7.1e-23 112.1 187 43.9
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.2e-22 111.3 235 39.6
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.6e-22 110.9 250 38.0
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.6e-22 110.9 250 38.0
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 2.1e-22 110.5 190 43.2
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 3.5e-22 109.8 204 39.2
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 4.6e-22 109.4 184 44.6
C05p62860 Brassica napus HOM05D004244 ORTHO05D004964 6.0e-22 109.0 86 70.9
BolC5t34941H Brassica oleracea HOM05D004244 ORTHO05D004964 6.0e-22 109.0 86 70.9
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.5e-20 104.4 184 38.6
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 2.5e-20 103.6 246 37.4
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 4.3e-20 102.8 265 33.6
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 5.6e-20 102.4 181 40.9
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 7.3e-20 102.1 190 39.5
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.2e-19 99.0 199 40.7
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.8e-18 97.4 187 39.0
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.8e-18 95.5 182 41.8
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 6.8e-18 95.5 198 34.8
A05p43120 Brassica napus HOM05D004244 ORTHO05D004964 1.2e-17 94.7 89 62.9
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.0e-17 94.0 244 35.2
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.4e-17 92.8 184 35.3
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 9.9e-17 91.7 246 31.7
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.7e-16 90.9 182 38.5
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.7e-16 90.9 180 38.9
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.7e-16 90.9 191 38.7
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 2.2e-16 90.5 193 37.8
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.8e-16 89.7 189 36.5
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 4.9e-16 89.4 197 35.5
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.4e-16 89.0 191 36.1
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 8.4e-16 88.6 184 37.5
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.4e-15 87.8 187 37.4
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 2.4e-15 87.0 189 38.6
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.4e-15 87.0 193 36.3
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 3.2e-15 86.7 190 33.7
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 3.2e-15 86.7 183 36.1
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 4.2e-15 86.3 184 37.5
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 7.1e-15 85.5 266 33.5
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 7.1e-15 85.5 185 36.8
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 9.3e-15 85.1 186 36.6
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 9.3e-15 85.1 245 31.8
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.2e-14 84.7 189 38.1
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.6e-14 84.3 181 37.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.1e-14 84.0 189 38.1
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 2.1e-14 84.0 188 37.2
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 3.5e-14 83.2 192 35.9
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.5e-14 83.2 175 37.1
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 3.5e-14 83.2 190 33.7
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 4.6e-14 82.8 224 29.5
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 4.6e-14 82.8 174 39.1
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 6.0e-14 82.4 192 35.9
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 7.8e-14 82.0 178 37.6
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 7.8e-14 82.0 281 29.5
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.3e-13 81.3 187 32.6
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.3e-13 81.3 184 37.0
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.3e-13 81.3 187 36.4
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.3e-13 81.3 174 35.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.3e-13 80.5 195 34.9
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.3e-13 80.5 187 36.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.0e-13 80.1 188 35.1
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 3.0e-13 80.1 190 32.6
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 3.0e-13 80.1 187 32.6
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 3.9e-13 79.7 184 35.9
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 3.9e-13 79.7 185 35.7
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 5.1e-13 79.3 187 35.8
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.1e-12 78.2 199 34.2
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.5e-12 77.8 183 35.0
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.5e-12 77.8 180 30.0
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.3e-12 76.6 180 35.6
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 3.3e-12 76.6 251 36.3
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 4.3e-12 76.3 171 34.5
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 5.6e-12 75.9 186 35.5
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.6e-11 74.3 177 33.3
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.6e-11 74.3 172 35.5
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.1e-11 73.9 278 28.4
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 2.1e-11 73.9 180 35.0
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 2.8e-11 73.6 174 33.3
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.6e-11 73.2 183 33.9
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.6e-11 73.2 183 33.9
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 4.8e-11 72.8 174 33.9
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.8e-11 72.8 186 34.9
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 8.1e-11 72.0 247 34.8
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.1e-10 71.6 188 33.0
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 1.1e-10 71.6 175 33.1
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.4e-10 70.5 192 32.8
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 4.0e-10 69.7 192 32.3
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.0e-10 69.7 170 35.3
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 5.3e-10 69.3 189 31.2
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 9.0e-10 68.6 189 30.7
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.5e-09 67.8 200 31.5
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.5e-09 67.8 194 32.0
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 2.0e-09 67.4 184 33.7
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 2.0e-09 67.4 181 31.5
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.0e-09 67.4 185 31.9
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.6e-09 67.0 255 32.5
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.6e-09 67.0 150 34.7
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 2.6e-09 67.0 175 32.0
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 1.3e-08 64.7 146 35.6
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.7e-08 64.3 178 33.1
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.7e-08 64.3 190 31.6
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 2.9e-08 63.5 182 31.3
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 2.9e-08 63.5 169 33.7
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 3.8e-08 63.2 240 30.8
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 4.9e-08 62.8 178 29.8
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.9e-08 62.8 119 39.5
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 6.4e-08 62.4 150 32.7
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 1.4e-07 61.2 149 33.6
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.9e-07 60.8 188 31.9
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.9e-07 60.8 188 30.9
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.9e-07 60.8 187 31.0
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 3.2e-07 60.1 190 28.9
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 7.1e-07 58.9 179 34.6
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 3.5e-06 56.6 164 32.9
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 6.0e-06 55.8 205 27.8
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 6.0e-06 55.8 167 28.7
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 7.9e-06 55.5 181 30.4


User provided reference genes

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