Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 0.0e+00 1187.9 625 100.0
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 7.7e-304 1046.6 629 90.1
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 6.6e-287 990.3 643 84.6
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 8.9e-284 979.9 632 85.3
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 9.5e-278 959.9 631 83.7
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 6.0e-256 887.5 655 76.3
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 5.8e-227 791.2 708 66.2
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 2.6e-211 739.2 724 61.2
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 3.2e-209 732.3 640 66.6
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 7.2e-209 731.1 727 59.6
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.7e-205 719.9 719 60.8
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 9.1e-196 687.6 712 59.1
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 2.8e-189 666.0 716 57.0
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 2.5e-153 546.6 717 48.7
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 9.0e-111 405.2 557 45.2
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 3.2e-108 396.7 392 62.0
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 5.0e-101 372.9 731 39.4
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 1.2e-99 368.2 731 36.3
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 4.6e-99 366.3 691 36.9
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 6.1e-99 365.9 741 38.1
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 7.9e-99 365.5 741 38.1
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 3.9e-98 363.2 751 37.7
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 7.4e-97 359.0 684 36.4
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.8e-96 357.1 707 38.8
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 4.8e-96 356.3 739 38.2
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 4.1e-95 353.2 701 37.4
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 2.0e-94 350.9 751 37.9
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 2.6e-94 350.5 720 36.9
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.9e-94 349.4 706 37.3
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 5.9e-94 349.4 719 38.0
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 2.2e-93 347.4 668 37.6
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.8e-93 346.7 672 38.2
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 6.5e-93 345.9 746 36.7
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.9e-92 344.4 703 36.7
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 1.2e-91 341.7 675 38.4
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 3.0e-90 337.0 736 36.0
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.5e-89 334.7 765 36.7
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 9.7e-89 332.0 658 38.0
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.5e-86 324.7 805 34.5
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 2.6e-86 323.9 646 37.2
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 5.9e-86 322.8 682 37.0
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 6.5e-85 319.3 717 34.4
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 1.9e-84 317.8 696 35.5
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 1.9e-84 317.8 695 36.4
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 3.2e-84 317.0 638 37.0
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 8.0e-83 312.4 727 35.5
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 3.9e-82 310.1 680 35.1
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 5.2e-82 309.7 700 35.6
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 1.3e-80 305.1 718 34.4
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.7e-80 304.7 674 35.0
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 1.7e-80 304.7 627 35.7
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 2.8e-80 303.9 675 35.6
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 4.8e-80 303.1 634 35.3
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 8.2e-80 302.4 638 35.1
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 8.2e-80 302.4 675 35.3
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.4e-79 301.6 742 33.7
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.0e-78 297.7 520 40.2
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 2.6e-78 297.4 718 34.1
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 4.5e-78 296.6 600 37.8
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 5.9e-78 296.2 652 35.7
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.9e-76 291.2 564 37.4
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 2.7e-75 287.3 649 35.1
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 6.1e-75 286.2 564 36.9
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 6.1e-75 286.2 713 33.1
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 3.0e-74 283.9 772 32.9
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.2e-74 283.1 512 39.8
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 6.7e-74 282.7 666 34.7
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 6.7e-74 282.7 627 36.0
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.2e-73 282.0 667 34.3
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.5e-73 281.6 637 35.3
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 4.4e-73 280.0 636 35.5
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 2.8e-72 277.3 495 40.8
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 6.3e-72 276.2 606 35.3
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 3.1e-71 273.9 640 33.3
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 3.1e-71 273.9 630 33.7
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 4.1e-71 273.5 539 37.1
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 2.7e-70 270.8 472 37.3
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 1.7e-69 268.1 650 35.5
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 2.2e-69 267.7 247 67.6
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 8.0e-67 259.2 495 40.6
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 1.0e-66 258.8 693 32.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.5e-65 255.0 615 34.5
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.6e-65 254.2 625 32.6
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 1.7e-64 251.5 382 42.7
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.3e-61 241.1 365 40.0
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.2e-59 235.3 415 39.0
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 2.6e-57 227.6 271 48.3
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 5.4e-55 219.9 595 32.1
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 5.9e-54 216.5 514 34.2
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 6.6e-53 213.0 346 38.7
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 2.1e-51 208.0 633 31.6
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 8.0e-51 206.1 553 30.4
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 8.9e-50 202.6 452 34.7
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 7.5e-49 199.5 191 64.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 6.4e-48 196.4 267 43.4
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 4.1e-47 193.7 386 37.0
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 1.2e-43 182.2 140 70.0
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 8.9e-42 176.0 599 30.4
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 5.8e-41 173.3 321 36.1
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 3.5e-38 164.1 373 36.2
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 3.0e-37 161.0 738 26.8
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 3.9e-37 160.6 342 39.8
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.1e-36 159.1 346 31.5
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 1.9e-36 158.3 293 41.6
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 9.5e-36 156.0 100 77.0
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.1e-35 154.8 428 31.5
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 4.7e-35 153.7 263 42.6
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.1e-28 132.5 308 38.0
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 2.5e-28 131.3 249 40.6
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 3.6e-27 127.5 251 36.3
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 2.0e-25 121.7 110 58.2
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.2e-22 112.5 237 38.8
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.0e-21 109.4 313 30.0
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.9e-21 107.5 106 58.5
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 1.9e-20 105.1 193 44.6
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 9.6e-20 102.8 239 32.6
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 1.9e-15 88.6 279 29.0
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 7.3e-12 76.6 107 45.8
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 5.8e-09 67.0 152 32.2
BolC5t34949H Brassica oleracea HOM05D006063 ORTHO05D000023 3.5e-06 57.8 40 72.5


User provided reference genes

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