Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 3.6e-24 114.4 70 100.0
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 3.6e-24 114.4 70 100.0
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 3.6e-24 114.4 70 100.0
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 1.3e-21 105.9 70 88.6
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 1.3e-21 105.9 70 88.6
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 4.1e-20 100.9 68 80.9
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 5.3e-20 100.5 66 81.8
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 6.9e-20 100.1 70 87.1
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 3.4e-19 97.8 67 79.1
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 3.4e-19 97.8 67 79.1
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 3.4e-19 97.8 67 79.1
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 3.4e-19 97.8 67 79.1
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 1.0e-18 96.3 66 83.3
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 1.0e-18 96.3 67 77.6
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 1.0e-18 96.3 67 77.6
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 1.0e-18 96.3 67 77.6
BcaC01g04554 Brassica carinata HOM05D002873 ORTHO05D002978 5.0e-18 94.0 70 85.7
Sp3g01520 Schrenkiella parvula HOM05D002873 ORTHO05D002978 5.5e-17 90.5 70 84.3
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 1.1e-12 76.3 67 62.7
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 67 61.2
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 67 61.2
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 67 61.2
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.8e-12 75.5 70 64.3
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-12 74.7 67 61.2
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 5.3e-12 73.9 67 59.7
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 7.0e-12 73.6 67 55.2
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 7.0e-12 73.6 67 55.2
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.2e-11 72.8 67 59.7
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 1.6e-11 72.4 67 58.2
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 2.0e-11 72.0 67 53.7
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 2.0e-11 72.0 67 53.7
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 2.0e-11 72.0 67 53.7
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 2.0e-11 72.0 67 58.2
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 4.5e-11 70.9 64 60.9
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.0e-10 69.7 67 59.7
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 61.2
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 56.7
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 1.3e-10 69.3 65 60.0
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 58.2
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 2.2e-10 68.6 63 58.7
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 2.5e-09 65.1 67 58.2
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 2.5e-09 65.1 67 58.2
Sp6g28150 Schrenkiella parvula HOM05D010783 ORTHO05D013000 2.5e-09 65.1 67 58.2
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 3.2e-09 64.7 65 55.4
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 3.2e-09 64.7 65 55.4
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 3.2e-09 64.7 65 53.8
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 3.2e-09 64.7 67 55.2
A10p23100 Brassica napus HOM05D010783 ORTHO05D013000 7.2e-09 63.5 67 56.7
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 7.2e-09 63.5 65 52.3
A02p03320 Brassica napus HOM05D010783 ORTHO05D013000 9.4e-09 63.2 67 56.7
BraA02t05303Z Brassica rapa HOM05D010783 ORTHO05D013000 9.4e-09 63.2 67 56.7
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 9.4e-09 63.2 70 54.3
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 9.4e-09 63.2 67 55.2
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 1.2e-08 62.8 67 64.2
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 54.5
Thhalv10015228m.g Eutrema salsugineum HOM05D010783 ORTHO05D013000 1.6e-08 62.4 67 55.2
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.6e-08 62.4 63 58.7
BraA10t44378Z Brassica rapa HOM05D010783 ORTHO05D013000 2.1e-08 62.0 67 55.2
CARHR197340 Cardamine hirsuta HOM05D010783 ORTHO05D013000 2.7e-08 61.6 67 53.7
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 69 52.2
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 59 54.2
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 3.6e-08 61.2 65 63.1
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 3.6e-08 61.2 65 55.4
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 4.7e-08 60.8 65 50.8
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 6.1e-08 60.5 64 50.0
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 6.1e-08 60.5 64 50.0
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 6.1e-08 60.5 67 52.2
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 6.1e-08 60.5 67 50.7
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.0e-07 59.7 65 52.3
BcaB08g36874 Brassica carinata HOM05D010783 ORTHO05D013000 1.0e-07 59.7 67 53.7
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 50.7
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.4e-07 59.3 67 61.2
BcaNung02219 Brassica carinata HOM05D010783 ORTHO05D013000 1.8e-07 58.9 67 55.2
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 1.8e-07 58.9 67 59.7
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 2.3e-07 58.5 65 52.3
Carub.0006s1416 Capsella rubella HOM05D010783 ORTHO05D013000 2.3e-07 58.5 67 50.7
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 69 52.2
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 3.0e-07 58.2 65 52.3
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 3.0e-07 58.2 67 56.7
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 4.0e-07 57.8 67 49.3
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 4.0e-07 57.8 60 55.0
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 4.0e-07 57.8 65 52.3
AT5G15970 Arabidopsis thaliana HOM05D010783 ORTHO05D013000 5.2e-07 57.4 67 49.3
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.2e-07 57.4 46 67.4
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 6.7e-07 57.0 67 52.2
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 6.7e-07 57.0 67 53.7
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 6.7e-07 57.0 67 53.7
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 6.7e-07 57.0 65 52.3
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 8.8e-07 56.6 67 52.2
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 8.8e-07 56.6 67 50.7
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 8.8e-07 56.6 67 52.2
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 8.8e-07 56.6 65 52.3
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 8.8e-07 56.6 59 50.8
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 1.2e-06 56.2 67 52.2
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 1.5e-06 55.8 70 48.6
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 2.0e-06 55.5 65 52.3
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 2.0e-06 55.5 67 53.7
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 2.0e-06 55.5 67 52.2
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 2.0e-06 55.5 67 52.2
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.0e-06 55.5 67 52.2
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.0e-06 55.5 67 52.2
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.6e-06 55.1 67 49.3
PSO478G1110 Papaver somniferum HOM05D002873 ORTHO05D002978 2.6e-06 55.1 67 58.2
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 56.9
BcaC04g18920 Brassica carinata HOM05D010783 ORTHO05D013000 4.4e-06 54.3 67 53.7
AT5G15960 Arabidopsis thaliana HOM05D010783 ORTHO05D013000 5.7e-06 53.9 67 46.3
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 7.5e-06 53.5 67 52.2
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 9.7e-06 53.1 65 52.3
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 9.7e-06 53.1 65 52.3
PSO017G1587 Papaver somniferum HOM05D002873 ORTHO05D002978 9.7e-06 53.1 67 58.2
PSO017G6817 Papaver somniferum HOM05D002873 ORTHO05D002978 9.7e-06 53.1 67 58.2
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 9.7e-06 53.1 65 46.2


User provided reference genes

Program Settings