Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p39530 Brassica napus HOM05D003560 ORTHO05D021703 2.2e-49 198.7 105 100.0
C03p39520 Brassica napus HOM05D003560 ORTHO05D021703 7.7e-47 190.3 105 96.2
C04p25460 Brassica napus HOM05D003560 ORTHO05D021703 1.7e-46 189.1 105 95.2
BolC4t24064H Brassica oleracea HOM05D003560 ORTHO05D021703 1.7e-46 189.1 105 95.2
BcaC01g00594 Brassica carinata HOM05D003560 ORTHO05D021703 2.9e-46 188.3 105 95.2
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 1.9e-45 185.7 104 93.3
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 1.9e-45 185.7 104 93.3
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 4.2e-45 184.5 104 92.3
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 4.2e-45 184.5 104 92.3
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 2.1e-44 182.2 104 91.3
A01p07380 Brassica napus HOM05D003560 ORTHO05D004500 4.1e-40 167.9 108 84.3
BraA01t00687Z Brassica rapa HOM05D003560 ORTHO05D004500 4.1e-40 167.9 108 84.3
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 2.6e-39 165.2 113 83.2
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 4.5e-39 164.5 113 81.4
BcaC09g51868 Brassica carinata HOM05D003560 ORTHO05D004500 1.0e-38 163.3 110 82.7
C01p08140 Brassica napus HOM05D003560 ORTHO05D004500 1.0e-38 163.3 110 82.7
BolC1t00801H Brassica oleracea HOM05D003560 ORTHO05D004500 1.0e-38 163.3 110 82.7
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 1.7e-38 162.5 113 78.8
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 2.9e-38 161.8 113 78.8
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 6.5e-38 160.6 113 78.8
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 8.5e-38 160.2 110 81.8
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 5.5e-37 157.5 113 75.2
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 3.6e-36 154.8 113 76.1
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 1.7e-33 146.0 108 75.0
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 2.8e-33 145.2 109 74.3
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 3.7e-33 144.8 109 74.3
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 3.7e-33 144.8 109 74.3
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 6.3e-33 144.1 108 74.1
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 9.1e-32 140.2 113 69.0
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 4.5e-31 137.9 113 66.4
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 1.3e-30 136.3 111 71.2
THA.LOC104803909 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 1.7e-30 136.0 113 67.3
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 3.0e-27 125.2 113 61.1
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 3.0e-27 125.2 113 61.1
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 1.5e-26 122.9 115 61.7
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 2.0e-26 122.5 113 60.2
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 2.6e-26 122.1 116 59.5
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 3.3e-26 121.7 116 57.8
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 9.7e-26 120.2 116 59.5
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 1.3e-25 119.8 113 61.1
BcaC02g10746 Brassica carinata HOM05D003560 ORTHO05D027224 1.7e-25 119.4 90 72.2
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 1.7e-25 119.4 111 60.4
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.2e-25 119.0 113 59.3
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.8e-25 118.6 113 59.3
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 3.7e-25 118.2 104 58.7
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 4.8e-25 117.9 111 60.4
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 4.8e-25 117.9 113 60.2
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 4.8e-25 117.9 116 59.5
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 8.2e-25 117.1 111 60.4
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 8.2e-25 117.1 116 58.6
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 1.1e-24 116.7 116 58.6
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 1.1e-24 116.7 116 57.8
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 1.4e-24 116.3 115 58.3
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 1.4e-24 116.3 115 58.3
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.4e-24 116.3 113 58.4
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 2.4e-24 115.5 115 58.3
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 3.1e-24 115.2 116 56.9
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 3.1e-24 115.2 116 59.5
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 3.1e-24 115.2 116 59.5
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 4.1e-24 114.8 113 57.5
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 4.1e-24 114.8 113 57.5
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 4.1e-24 114.8 113 57.5
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 5.3e-24 114.4 116 56.9
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 7.0e-24 114.0 116 56.9
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 9.1e-24 113.6 113 54.0
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 9.1e-24 113.6 104 56.7
GSVIVG01023682001 Vitis vinifera HOM05D003560 ORTHO05D004500 9.1e-24 113.6 114 55.3
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 1.2e-23 113.2 112 58.0
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 1.2e-23 113.2 115 59.1
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 1.6e-23 112.8 116 56.9
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 1.6e-23 112.8 117 54.7
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 1.6e-23 112.8 116 56.9
Hma1.2p1_0222F.1_g093876 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.0e-23 112.5 117 54.7
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.0e-23 112.5 117 54.7
Hma1.2p1_0222F.1_g093910 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.0e-23 112.5 117 54.7
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 2.7e-23 112.1 115 58.3
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 3.5e-23 111.7 104 56.7
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 3.5e-23 111.7 114 57.0
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 7.7e-23 110.5 116 56.0
arahy.Tifrunner.gnm1.ann1.IP23DV Arachis hypogaea HOM05D003560 ORTHO05D004500 7.7e-23 110.5 116 56.0
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 7.7e-23 110.5 115 56.5
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.0e-22 110.2 116 51.7
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 1.3e-22 109.8 116 54.3
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 2.2e-22 109.0 116 54.3
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 2.9e-22 108.6 116 54.3
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 3.8e-22 108.2 116 53.4
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 3.8e-22 108.2 116 52.6
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 8.5e-22 107.1 116 53.4
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 8.5e-22 107.1 112 56.2
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.1e-21 106.7 116 55.2
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 2.5e-21 105.5 109 57.8
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 2.5e-21 105.5 116 54.3
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 2.5e-21 105.5 116 52.6
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 3.2e-21 105.1 116 50.9
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 3.2e-21 105.1 109 56.0
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 5.5e-21 104.4 114 52.6
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 5.5e-21 104.4 112 53.6
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 5.5e-21 104.4 110 51.8
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 9.4e-21 103.6 116 52.6
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 9.4e-21 103.6 116 52.6
AUR62025371 Chenopodium quinoa HOM05D003560 ORTHO05D004500 1.2e-20 103.2 113 52.2
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 1.2e-20 103.2 116 53.4
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 1.2e-20 103.2 116 51.7
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 1.6e-20 102.8 113 54.0
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 2.1e-20 102.4 118 51.7
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 2.7e-20 102.1 111 53.2
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 2.7e-20 102.1 114 50.9
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 3.6e-20 101.7 113 52.2
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 3.6e-20 101.7 112 53.6
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 3.6e-20 101.7 114 50.0
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 3.6e-20 101.7 116 50.0
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 4.7e-20 101.3 114 50.9
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 4.7e-20 101.3 114 50.9
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 6.1e-20 100.9 104 53.8
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 6.1e-20 100.9 116 52.6
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 8.0e-20 100.5 116 50.9
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 8.0e-20 100.5 114 50.0
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.0e-19 100.1 116 51.7
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 1.4e-19 99.8 116 51.7
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 1.8e-19 99.4 115 53.0
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 2.3e-19 99.0 114 50.0
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 2.3e-19 99.0 116 50.9
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 3.0e-19 98.6 114 49.1
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 4.0e-19 98.2 109 52.3
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 4.0e-19 98.2 115 53.0
unitig_37.g12751 Utricularia gibba HOM05D003560 ORTHO05D004500 5.2e-19 97.8 113 51.3
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 6.8e-19 97.4 117 48.7
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 6.8e-19 97.4 114 47.4
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 6.8e-19 97.4 116 48.3
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 8.8e-19 97.1 116 50.9
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 1.5e-18 96.3 116 49.1
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 1.5e-18 96.3 104 52.9
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 3.4e-18 95.1 115 48.7
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 3.4e-18 95.1 116 50.0
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 3.4e-18 95.1 116 50.0
MBI14_g08698_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 7.5e-18 94.0 111 46.8
MBI14_g31376_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 7.5e-18 94.0 111 46.8
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 1.7e-17 92.8 116 47.4
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 6.3e-17 90.9 104 52.9
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 6.3e-17 90.9 104 52.9
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 1.4e-16 89.7 120 45.0
SMO301G0012 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 1.6e-15 86.3 104 51.0
VMungo1127G1083 Vigna mungo HOM05D003560 ORTHO05D021703 2.7e-15 85.5 108 47.2
Os02g0179800 Oryza sativa ssp. japonica HOM05D003560 ORTHO05D004500 1.0e-14 83.6 118 44.1
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 5.0e-14 81.3 116 44.0
ECA236G1776 Erigeron canadensis HOM05D003560 ORTHO05D004500 5.0e-14 81.3 104 42.3
Zm00001eb206680 Zea mays HOM05D003560 ORTHO05D004500 8.5e-14 80.5 115 40.0
Zm00001eb233940 Zea mays HOM05D003560 ORTHO05D004500 1.1e-13 80.1 116 39.7
Ah.14g084380 Amaranthus hybridus HOM05D003560 ORTHO05D004500 1.5e-13 79.7 114 43.0
CDE05G3326 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 2.5e-13 79.0 115 44.3
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 3.2e-13 78.6 104 42.3
AagrBONN_evm.TU.Sc2ySwM_344.4294 Anthoceros agrestis HOM05D003560 ORTHO05D004500 5.5e-13 77.8 105 42.9
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 3.6e-12 75.1 104 41.3
HanXRQChr05g0141571 Helianthus annuus HOM05D003560 ORTHO05D004500 6.1e-12 74.3 104 41.3
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 6.1e-12 74.3 116 44.8
Mapoly0041s0089 Marchantia polymorpha HOM05D003560 ORTHO05D004500 1.0e-11 73.6 113 40.7
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 2.3e-11 72.4 116 40.5
Pp3c22_15890 Physcomitrium patens HOM05D003560 ORTHO05D004500 3.0e-11 72.0 119 42.0
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 5.4e-08 61.2 115 37.4
CBR_g55388 Chara braunii HOM05D003560 ORTHO05D004500 9.2e-08 60.5 126 31.7
CBR_g38482 Chara braunii HOM05D003560 ORTHO05D004500 2.0e-07 59.3 121 32.2
SMO361G0456 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 2.0e-07 59.3 105 34.3
SMO361G0185 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 4.5e-07 58.2 104 35.6


User provided reference genes

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