Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.3e-140 502.3 262 100.0
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 6.6e-140 500.7 262 99.6
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 6.6e-140 500.7 262 99.6
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 8.9e-137 490.3 262 97.7
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 3.5e-133 478.4 262 95.8
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 6.6e-132 474.2 262 94.3
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.1e-131 473.4 266 94.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 2.5e-131 472.2 265 93.6
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 4.0e-129 464.9 266 92.9
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.2e-127 459.1 265 90.9
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 8.4e-127 457.2 261 91.6
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 7.1e-126 454.1 269 89.6
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 4.6e-125 451.4 247 96.0
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.3e-124 449.9 247 95.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 5.3e-121 438.0 247 94.3
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 5.3e-121 438.0 247 94.3
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.3e-111 406.8 245 87.3
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 2.9e-111 405.6 271 77.9
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 6.9e-105 384.4 271 74.2
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.3e-103 380.2 269 72.9
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 2.5e-102 375.9 272 72.8
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 3.2e-102 375.6 267 71.2
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.0e-100 370.5 267 69.7
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 3.9e-100 368.6 265 71.3
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 6.7e-100 367.9 268 73.9
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.1e-99 367.1 267 71.5
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.1e-99 367.1 270 72.6
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 1.5e-99 366.7 266 72.6
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.5e-99 365.9 266 72.9
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 7.4e-99 364.4 267 70.8
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 9.7e-99 364.0 266 71.8
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 9.7e-99 364.0 265 70.9
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.8e-98 361.7 259 73.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.8e-98 361.7 259 73.0
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.8e-98 361.7 259 73.0
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 4.8e-98 361.7 266 71.4
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 6.3e-98 361.3 269 70.3
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.1e-97 360.5 259 72.6
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-97 360.5 259 72.6
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-97 360.5 259 72.6
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.4e-97 360.1 265 68.7
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 3.1e-97 359.0 259 72.2
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 6.9e-97 357.8 263 71.5
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 6.9e-97 357.8 269 70.3
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.2e-96 357.1 266 69.9
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.5e-96 356.7 270 71.1
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.5e-96 356.7 270 71.9
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.5e-96 356.7 266 71.4
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.6e-96 355.9 268 69.0
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 2.6e-96 355.9 265 73.2
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 3.4e-96 355.5 264 70.5
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 3.4e-96 355.5 267 70.0
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 7.7e-96 354.4 272 72.1
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-95 354.0 264 68.9
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.3e-95 353.6 197 95.4
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.3e-95 353.6 197 95.4
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.3e-95 353.6 264 69.3
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 3.8e-95 352.1 267 70.4
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 5.0e-95 351.7 261 69.7
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 8.5e-95 350.9 263 70.0
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.4e-94 350.1 261 70.5
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.9e-94 349.7 263 68.1
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 2.5e-94 349.4 268 68.3
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 5.5e-94 348.2 270 67.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 5.5e-94 348.2 265 69.4
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 5.5e-94 348.2 274 67.9
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 5.5e-94 348.2 260 69.6
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 5.5e-94 348.2 266 68.8
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 5.5e-94 348.2 267 68.2
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.2e-93 347.1 272 68.0
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.6e-93 346.7 264 71.6
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 2.7e-93 345.9 267 68.5
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 3.6e-93 345.5 263 69.2
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 4.6e-93 345.1 274 67.5
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 4.6e-93 345.1 267 68.9
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 5.1e-92 341.7 266 68.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 6.7e-92 341.3 266 69.5
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 8.8e-92 340.9 264 66.3
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 2.0e-91 339.7 272 66.5
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 2.5e-91 339.3 263 67.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 2.5e-91 339.3 268 69.8
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 4.3e-91 338.6 268 67.9
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 9.7e-91 337.4 266 66.9
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 9.7e-91 337.4 261 69.0
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.7e-90 336.7 261 67.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 8.2e-90 334.3 258 68.2
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 8.2e-90 334.3 272 64.7
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.0e-88 329.7 259 66.8
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 2.0e-88 329.7 259 66.4
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.4e-88 328.9 221 73.8
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.0e-87 327.4 259 66.4
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.7e-87 326.6 265 64.2
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 5.0e-87 325.1 256 67.6
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.5e-87 324.7 268 64.6
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 9.4e-86 320.9 266 62.0
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 2.7e-85 319.3 237 67.9
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 7.4e-83 311.2 303 57.8
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 8.2e-82 307.8 266 62.4
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 4.1e-81 305.4 211 72.5
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 7.0e-81 304.7 236 68.2
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 2.0e-80 303.1 254 61.8
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.8e-76 290.0 259 61.4
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 3.3e-75 285.8 224 63.4
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 8.2e-74 281.2 221 62.0
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 7.0e-73 278.1 184 73.4
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-72 276.9 190 74.7
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.2e-69 267.3 244 55.7
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.1e-69 266.5 265 55.8
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.8e-68 263.5 208 61.1
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 4.0e-68 262.3 217 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 3.4e-67 259.2 183 65.6
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 3.7e-66 255.8 180 65.6
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 2.4e-65 253.1 237 57.4
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 4.5e-64 248.8 225 59.1
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 5.5e-62 241.9 262 58.8
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 5.5e-62 241.9 262 58.8
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.6e-61 240.4 262 58.4
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 2.4e-57 226.5 176 71.6
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 2.0e-51 206.8 141 68.1
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 7.8e-48 194.9 132 74.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.2e-43 181.0 153 52.9
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.1e-38 164.5 154 48.7
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.9e-38 163.7 119 71.4
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.2e-35 154.5 155 55.5
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.4e-35 152.9 115 64.3
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.0e-27 127.1 98 69.4
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 7.6e-27 125.2 179 36.9
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-23 114.8 68 80.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.7e-18 97.4 70 67.1
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.8e-18 96.3 69 63.8
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.9e-15 86.3 66 65.2
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 6.6e-15 85.5 163 28.8
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 9.0e-12 75.1 60 63.3
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.4e-09 67.0 83 49.4
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 3.2e-09 66.6 39 79.5
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.5e-06 57.0 113 33.6
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 5.6e-06 55.8 124 26.6
CDE10G0560 Ceratophyllum demersum HOM05D000487 ORTHO05D001505 5.6e-06 55.8 149 25.5
Cre01.g027000 Chlamydomonas reinhardtii HOM05D001556 ORTHO05D001505 9.6e-06 55.1 129 27.9


User provided reference genes

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