Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 5.7e-46 187.2 93 100.0
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 5.7e-46 187.2 93 100.0
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 5.7e-46 187.2 93 100.0
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 1.3e-45 186.0 93 98.9
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 2.7e-43 178.3 93 96.8
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 8.6e-42 173.3 91 92.3
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.5e-41 172.6 92 88.0
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.5e-41 172.6 92 88.0
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.5e-41 172.6 92 88.0
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.5e-41 172.6 92 88.0
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 2.5e-41 171.8 93 88.2
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 2.5e-41 171.8 93 90.3
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 7.3e-41 170.2 93 86.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 1.2e-40 169.5 93 88.2
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.8e-40 168.3 93 84.9
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 3.6e-40 167.9 93 86.0
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 4.7e-40 167.5 93 86.0
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 6.2e-40 167.2 93 86.0
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 3.1e-39 164.9 88 89.8
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 3.1e-39 164.9 81 100.0
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 3.1e-39 164.9 93 84.9
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 3.1e-39 164.9 93 84.9
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 1.2e-38 162.9 93 81.7
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 2.6e-38 161.8 81 98.8
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 7.0e-36 153.7 88 83.0
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 1.0e-34 149.8 99 74.7
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 9.5e-33 143.3 80 85.0
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.1e-31 139.8 88 76.1
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 7.5e-30 133.7 81 77.8
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 4.9e-29 131.0 75 82.7
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 5.4e-28 127.5 91 69.2
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 9.2e-28 126.7 74 79.7
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 9.2e-28 126.7 74 79.7
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 9.2e-28 126.7 74 79.7
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.2e-27 126.3 78 80.8
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 7.8e-27 123.6 93 62.4
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 1.3e-26 122.9 88 70.5
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 1.7e-26 122.5 90 65.6
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 5.1e-26 120.9 91 61.5
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 9.5e-25 116.7 82 65.9
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 1.4e-23 112.8 57 91.2
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 1.4e-23 112.8 70 78.6
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 1.8e-23 112.5 99 59.6
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 1.8e-23 112.5 99 59.6
BolSC29t60614H Brassica oleracea HOM05D000540 ORTHO05D009557 3.1e-23 111.7 59 94.9
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 4.0e-23 111.3 67 76.1
Hund04059 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund19321 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund26846 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund27592 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund27964 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund28044 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund28461 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund28465 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund28634 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29039 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29219 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29502 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29527 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29546 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29570 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29607 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29614 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29663 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund29959 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund30110 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund30114 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund30274 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Hund30581 Selenicereus undatus HOM05D000540 ORTHO05D009557 4.0e-23 111.3 62 83.9
Lj2P692T49 Lonicera japonica HOM05D000540 ORTHO05D009557 5.2e-23 110.9 63 79.4
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.6e-22 108.6 67 71.6
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 9.9e-22 106.7 50 100.0
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 9.9e-22 106.7 50 100.0
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 9.9e-22 106.7 50 100.0
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 9.9e-22 106.7 50 100.0
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 9.9e-22 106.7 50 100.0
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 1.1e-20 103.2 68 66.2
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 1.4e-20 102.8 50 96.0
Gorai.005G167500 Gossypium raimondii HOM05D000540 ORTHO05D009557 1.2e-19 99.8 61 82.0
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.2e-19 99.8 50 90.0
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.2e-19 99.8 50 90.0
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 2.1e-19 99.0 83 56.6
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 2.1e-19 99.0 50 90.0
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 2.7e-19 98.6 73 61.6
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 2.7e-19 98.6 73 61.6
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 3.5e-19 98.2 50 88.0
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 4.6e-19 97.8 68 64.7
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 7.8e-19 97.1 58 74.1
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 7.8e-19 97.1 86 51.2
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 7.8e-19 97.1 50 88.0
Lalb_Chr13g0292571 Lupinus albus HOM05D000540 ORTHO05D009557 1.3e-18 96.3 53 86.8
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 1.3e-18 96.3 76 61.8
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 1.3e-18 96.3 88 51.1
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.3e-18 95.5 50 86.0
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 3.0e-18 95.1 73 61.6
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 3.9e-18 94.7 73 60.3
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 1.1e-17 93.2 50 84.0
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 1.1e-17 93.2 50 86.0
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 1.5e-17 92.8 73 58.9
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 1.5e-17 92.8 73 61.6
Oeu001341.1 Olea europaea HOM05D000218 ORTHO05D000125 1.5e-17 92.8 68 61.8
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 1.5e-17 92.8 50 84.0
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 7.3e-17 90.5 93 45.2
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 7.3e-17 90.5 73 60.3
unitig_699.g19584 Utricularia gibba HOM05D000218 ORTHO05D000125 2.8e-16 88.6 68 58.8
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 3.1e-15 85.1 48 75.0
Sc25g0002530 Simmondsia chinensis HOM05D000540 ORTHO05D000681 2.2e-13 79.0 58 69.0
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 2.9e-13 78.6 56 58.9
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 1.4e-12 76.3 56 55.4
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 5.4e-12 74.3 64 53.1
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 4.6e-11 71.2 37 83.8
Medtr8g038480 Medicago truncatula HOM05D000540 ORTHO05D009557 6.0e-11 70.9 39 79.5
BraSC138t45550Z Brassica rapa HOM05D000540 ORTHO05D009557 1.9e-09 65.9 30 96.7
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 2.8e-08 62.0 85 41.2
Nn6g34181 Nelumbo nucifera HOM05D000540 ORTHO05D009557 4.8e-08 61.2 60 51.7
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 4.0e-07 58.2 88 37.5
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 4.0e-07 58.2 73 39.7
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 6.9e-07 57.4 89 36.0
Peaxi162Scf00211g00236 Petunia axillaris HOM05D000540 ORTHO05D000681 6.9e-07 57.4 28 89.3
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 9.0e-07 57.0 69 43.5
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 1.2e-06 56.6 89 36.0
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.2e-06 56.6 85 37.6
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.0e-06 55.8 85 37.6
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.0e-06 55.8 85 37.6
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 2.6e-06 55.5 93 35.5
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 2.6e-06 55.5 68 41.2
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.6e-06 55.5 68 41.2
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.6e-06 55.5 68 41.2
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.6e-06 55.5 68 41.2
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 2.6e-06 55.5 52 48.1
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 3.4e-06 55.1 85 37.6
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.4e-06 55.1 68 41.2
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 3.4e-06 55.1 52 48.1
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 3.4e-06 55.1 83 39.8
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 3.4e-06 55.1 83 39.8
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 3.4e-06 55.1 83 39.8
A09p08050 Brassica napus HOM05D000856 ORTHO05D001792 4.4e-06 54.7 75 38.7
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 4.4e-06 54.7 68 41.2
C09p09120 Brassica napus HOM05D000856 ORTHO05D001792 5.8e-06 54.3 78 39.7
BolC9t53824H Brassica oleracea HOM05D000856 ORTHO05D001792 5.8e-06 54.3 78 39.7
SGA_v2.0_scaffold123G33382 Striga asiatica HOM05D000540 ORTHO05D400302 7.6e-06 53.9 34 70.6
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 9.9e-06 53.5 77 37.7
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 9.9e-06 53.5 74 37.8


User provided reference genes

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