Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p37500 Brassica napus HOM05D009523 ORTHO05D000721 3.5e-97 358.2 175 100.0
A03p30820 Brassica napus HOM05D009523 ORTHO05D000721 4.3e-95 351.3 175 98.3
BraA03t12260Z Brassica rapa HOM05D009523 ORTHO05D000721 1.8e-93 345.9 178 96.6
BolC3t16043H Brassica oleracea HOM05D009523 ORTHO05D000721 6.9e-93 344.0 187 92.0
BcaC01g06726 Brassica carinata HOM05D009523 ORTHO05D000721 7.7e-84 313.9 175 90.9
Thhalv10029004m.g Eutrema salsugineum HOM05D009523 ORTHO05D000721 1.7e-62 243.0 186 71.0
AL6G50100 Arabidopsis lyrata HOM05D009523 ORTHO05D000721 6.3e-62 241.1 187 69.5
A02p25000 Brassica napus HOM05D009523 ORTHO05D000721 4.5e-60 235.0 185 69.7
C02p39580 Brassica napus HOM05D009523 ORTHO05D000721 3.8e-59 231.9 185 69.2
BraA02t07489Z Brassica rapa HOM05D009523 ORTHO05D000721 1.5e-58 229.9 185 68.6
Sp6g02860 Schrenkiella parvula HOM05D009523 ORTHO05D000721 1.5e-58 229.9 190 66.3
CARHR251200 Cardamine hirsuta HOM05D009523 ORTHO05D000721 1.9e-58 229.6 188 68.1
BcaC03g16182 Brassica carinata HOM05D009523 ORTHO05D000721 4.2e-58 228.4 185 68.1
BolC2t09971H Brassica oleracea HOM05D009523 ORTHO05D000721 4.2e-58 228.4 185 68.1
AT4G02830 Arabidopsis thaliana HOM05D009523 ORTHO05D000721 1.2e-57 226.9 188 68.1
BcaB05g23666 Brassica carinata HOM05D009523 ORTHO05D000721 2.7e-57 225.7 189 67.2
Carub.0006s3422 Capsella rubella HOM05D009523 ORTHO05D000721 1.6e-52 209.9 187 63.1
Aa31LG5G2410 Aethionema arabicum HOM05D009523 ORTHO05D000721 1.3e-35 153.7 183 51.9
C09p02310 Brassica napus HOM05D009523 ORTHO05D000721 9.5e-18 94.4 152 45.4
BolC9t53159H Brassica oleracea HOM05D009523 ORTHO05D000721 2.1e-17 93.2 152 44.7
A09p02220 Brassica napus HOM05D009523 ORTHO05D000721 2.8e-17 92.8 152 44.7
BraA09t35871Z Brassica rapa HOM05D009523 ORTHO05D000721 2.8e-17 92.8 152 44.7
BcaC04g24018 Brassica carinata HOM05D009523 ORTHO05D000721 1.8e-16 90.1 140 45.0
THA.LOC104825998 Tarenaya hassleriana HOM05D009523 ORTHO05D000721 6.8e-16 88.2 148 44.6
Hund05343 Selenicereus undatus HOM05D001128 ORTHO05D000721 8.4e-14 81.3 188 35.6
Thecc.01G280100 Theobroma cacao HOM05D001128 ORTHO05D000721 2.1e-12 76.6 194 35.6
CiPaw.08G105000 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.5e-12 75.9 113 47.8
MD11G1286400 Malus domestica HOM05D001128 ORTHO05D000721 6.0e-12 75.1 187 36.9
Potri.005G208800 Populus trichocarpa HOM05D001128 ORTHO05D000721 6.0e-12 75.1 186 34.4
Gohir.D08G204000 Gossypium hirsutum HOM05D009523 ORTHO05D000721 1.0e-11 74.3 176 35.2
Gorai.004G080700 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.0e-11 74.3 200 31.5
Duzib138G1095 Durio zibethinus HOM05D001128 ORTHO05D000721 1.3e-11 73.9 189 36.0
Gorai.004G216000 Gossypium raimondii HOM05D009523 ORTHO05D000721 1.3e-11 73.9 176 35.2
Prupe.8G241700 Prunus persica HOM05D001128 ORTHO05D000721 1.3e-11 73.9 188 35.1
Sc17g0004110 Simmondsia chinensis HOM05D001128 ORTHO05D000721 1.7e-11 73.6 193 33.7
Atru.chr5.1430 Acer truncatum HOM05D001128 ORTHO05D000721 3.9e-11 72.4 187 32.6
Dinv32942 Davidia involucrata HOM05D001128 ORTHO05D000721 3.9e-11 72.4 103 46.6
Lalb_Chr06g0163041 Lupinus albus HOM05D001128 ORTHO05D000721 3.9e-11 72.4 188 31.4
Phvul.001G150600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.9e-11 72.4 188 32.4
arahy.Tifrunner.gnm1.ann1.S3CEFB Arachis hypogaea HOM05D001128 ORTHO05D000721 6.6e-11 71.6 205 31.7
Lj1g0006514 Lotus japonicus HOM05D001128 ORTHO05D000721 8.6e-11 71.2 181 35.9
QL12p021827 Quercus lobata HOM05D001128 ORTHO05D000721 8.6e-11 71.2 111 43.2
PGR044G1404 Punica granatum HOM05D001128 ORTHO05D000721 1.1e-10 70.9 118 42.4
MD03G1266000 Malus domestica HOM05D001128 ORTHO05D000721 1.5e-10 70.5 115 47.0
Glyma.19G155600 Glycine max HOM05D001128 ORTHO05D000721 1.9e-10 70.1 186 32.8
Potri.002G053700 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.9e-10 70.1 185 37.3
Sabra05G0158900 Salix brachista HOM05D001128 ORTHO05D000721 1.9e-10 70.1 112 44.6
Gohir.A08G185900 Gossypium hirsutum HOM05D009523 ORTHO05D000721 2.5e-10 69.7 176 34.7
Ciclev10023667m.g Citrus clementina HOM05D001128 ORTHO05D000721 3.3e-10 69.3 178 36.5
Haze_04722 Corylus avellana HOM05D001128 ORTHO05D000721 3.3e-10 69.3 66 63.6
Glyma.02G147700 Glycine max HOM05D001128 ORTHO05D000721 4.3e-10 68.9 189 31.7
Glyma.03G153200 Glycine max HOM05D001128 ORTHO05D000721 7.3e-10 68.2 188 30.9
Sabra02G0043700 Salix brachista HOM05D001128 ORTHO05D000721 7.3e-10 68.2 124 42.7
RcHm_v2.0_Chr6g0291121 Rosa chinensis HOM05D001128 ORTHO05D000721 1.2e-09 67.4 120 40.0
SalBow4G1333 Salvia bowleyana HOM05D001128 ORTHO05D000721 1.2e-09 67.4 114 44.7
Duzib211G0347 Durio zibethinus HOM05D001128 ORTHO05D000721 1.6e-09 67.0 141 36.2
HanXRQChr01g0003181 Helianthus annuus HOM05D001128 ORTHO05D000721 2.1e-09 66.6 162 32.7
Gohir.D08G076400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.7e-09 65.5 198 30.3
Glyma.10G026100 Glycine max HOM05D001128 ORTHO05D000721 6.2e-09 65.1 192 30.2
Lsat_1_v5_gn_5_188320 Lactuca sativa HOM05D001128 ORTHO05D000721 6.2e-09 65.1 112 42.9
Actinidia21110 Actinidia chinensis HOM05D001128 ORTHO05D000721 8.1e-09 64.7 128 40.6
CANSAT25G3618 Cannabis sativa HOM05D001128 ORTHO05D000721 1.1e-08 64.3 200 33.0
Nn1g02211 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.4e-08 63.9 117 39.3
COL.COLO4_09103 Corchorus olitorius HOM05D005331 ORTHO05D007596 1.8e-08 63.5 150 34.7
Phvul.007G171600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 1.8e-08 63.5 194 32.0
QL12p021963 Quercus lobata HOM05D001128 ORTHO05D000721 2.4e-08 63.2 191 31.4
Cpa.g.sc52.31 Carica papaya HOM05D001128 ORTHO05D000721 3.1e-08 62.8 182 35.2
HPP92_018175 Vanilla planifolia HOM05D001128 ORTHO05D000721 3.1e-08 62.8 119 39.5
MELO3C015842.2 Cucumis melo HOM05D001128 ORTHO05D000721 4.0e-08 62.4 119 39.5
CsaV3_7G028180 Cucumis sativus L. HOM05D001128 ORTHO05D000721 4.0e-08 62.4 119 39.5
Manes.05G075700 Manihot esculenta HOM05D001128 ORTHO05D000721 5.2e-08 62.0 112 42.0
TAR633G0329 Trochodendron aralioides HOM05D001128 ORTHO05D000721 5.2e-08 62.0 199 33.7
FAN20G0154 Fragaria x ananassa HOM05D001128 ORTHO05D000721 6.8e-08 61.6 123 36.6
FAN27G0408 Fragaria x ananassa HOM05D001128 ORTHO05D000721 8.9e-08 61.2 121 36.4
Migut.D00291 Erythranthe guttata HOM05D001128 ORTHO05D000721 1.2e-07 60.8 103 45.6
Nitab4.5_0002823g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.2e-07 60.8 134 37.3
ClCG09G006980 Citrullus lanatus HOM05D001128 ORTHO05D000721 1.5e-07 60.5 116 38.8
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 1.5e-07 60.5 175 35.4
MELO3C003199.2 Cucumis melo HOM05D001128 ORTHO05D000721 2.0e-07 60.1 119 36.1
Os01g0850000 Oryza sativa ssp. japonica HOM05D001128 ORTHO05D000721 2.0e-07 60.1 144 38.2
Zm00001eb367680 Zea mays HOM05D001128 ORTHO05D000721 2.0e-07 60.1 70 52.9
Nitab4.5_0000652g0060 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.6e-07 59.7 119 39.5
Manes.01G208200 Manihot esculenta HOM05D001128 ORTHO05D000721 4.4e-07 58.9 180 34.4
Oeu028076.1 Olea europaea HOM05D001128 ORTHO05D000721 4.4e-07 58.9 103 42.7
VMungo0720G0300 Vigna mungo HOM05D001128 ORTHO05D000721 4.4e-07 58.9 194 29.9
Sed0019989 Sechium edule HOM05D001128 ORTHO05D000721 5.8e-07 58.5 116 38.8
GSVIVG01011088001 Vitis vinifera HOM05D001128 ORTHO05D000721 5.8e-07 58.5 232 29.7
Actinidia24889 Actinidia chinensis HOM05D000300 ORTHO05D000383 7.6e-07 58.2 143 36.4
Lsat_1_v5_gn_8_80861 Lactuca sativa HOM05D001128 ORTHO05D000721 7.6e-07 58.2 144 34.7
Rhsim01G0275000 Rhododendron simsii HOM05D005331 ORTHO05D007596 7.6e-07 58.2 70 52.9
Aqoxy2G03314 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 9.9e-07 57.8 203 32.5
MSTRG.10240 Avicennia marina HOM05D001128 ORTHO05D000721 9.9e-07 57.8 126 35.7
Ciclev10011799m.g Citrus clementina HOM05D001128 ORTHO05D000721 9.9e-07 57.8 153 34.6
CsaV3_4G025740 Cucumis sativus L. HOM05D001128 ORTHO05D000721 9.9e-07 57.8 119 37.8
ECA236G1683 Erigeron canadensis HOM05D001128 ORTHO05D000721 9.9e-07 57.8 109 41.3
FvH4_2g23650 Fragaria vesca HOM05D001128 ORTHO05D000721 9.9e-07 57.8 172 30.8
Gohir.A08G067900 Gossypium hirsutum HOM05D001128 ORTHO05D000721 9.9e-07 57.8 144 33.3
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 9.9e-07 57.8 126 32.5
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 9.9e-07 57.8 133 36.1
Medtr1g072310 Medicago truncatula HOM05D001128 ORTHO05D000721 9.9e-07 57.8 187 29.9
SGA_v2.0_scaffold1G00467 Striga asiatica HOM05D001128 ORTHO05D000721 9.9e-07 57.8 116 39.7
FAN15G2738 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.3e-06 57.4 192 28.6
Oeu028077.1 Olea europaea HOM05D001128 ORTHO05D000721 1.3e-06 57.4 103 41.7
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 1.3e-06 57.4 96 43.8
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 1.3e-06 57.4 96 43.8
Psat6g060440 Pisum sativum HOM05D001128 ORTHO05D000721 1.3e-06 57.4 206 30.6
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 1.7e-06 57.0 140 36.4
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.7e-06 57.0 147 32.7
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.7e-06 57.0 126 32.5
Nn4g26238 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.7e-06 57.0 184 31.0
Sed0025256 Sechium edule HOM05D001128 ORTHO05D000721 1.7e-06 57.0 122 38.5
FAN24G2693 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.2e-06 56.6 192 29.2
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.2e-06 56.6 104 40.4
PSO541G6419 Papaver somniferum HOM05D001128 ORTHO05D000721 2.9e-06 56.2 175 31.4
arahy.Tifrunner.gnm1.ann1.463IUL Arachis hypogaea HOM05D001128 ORTHO05D000721 3.8e-06 55.8 159 35.2
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 4.9e-06 55.5 160 35.6
Peaxi162Scf00009g03319 Petunia axillaris HOM05D001128 ORTHO05D000721 4.9e-06 55.5 150 32.0
Zm00001eb147910 Zea mays HOM05D001128 ORTHO05D000721 4.9e-06 55.5 57 56.1
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.4e-06 55.1 161 34.2
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 6.4e-06 55.1 161 34.2
Manes.07G123000 Manihot esculenta HOM05D001128 ORTHO05D000721 6.4e-06 55.1 102 37.3
ATR0210G013 Amborella trichopoda HOM05D001128 ORTHO05D000721 8.4e-06 54.7 114 38.6
arahy.Tifrunner.gnm1.ann1.KBQI3L Arachis hypogaea HOM05D001128 ORTHO05D000721 8.4e-06 54.7 159 35.2
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 8.4e-06 54.7 119 39.5
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 8.4e-06 54.7 149 32.9


User provided reference genes

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