Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.8e-253 879.0 532 100.0
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 4.9e-243 844.3 533 93.1
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.7e-182 643.3 550 77.3
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.4e-176 623.6 541 76.7
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.0e-163 580.9 565 64.2
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.6e-154 547.7 558 62.0
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 5.8e-151 538.5 550 62.0
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.6e-145 520.4 554 60.5
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 4.8e-145 518.8 564 59.6
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.2e-143 514.2 563 58.3
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 4.6e-140 502.3 534 61.0
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 6.2e-137 491.9 542 63.5
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 8.1e-137 491.5 534 60.3
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.4e-136 490.7 534 59.6
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.6e-135 486.5 534 59.4
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.9e-109 400.6 556 48.4
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.6e-108 396.4 600 45.8
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.4e-106 389.4 594 47.5
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 9.7e-106 388.3 561 47.6
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 3.8e-102 376.3 597 45.2
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.2e-101 372.9 595 44.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.0e-99 368.2 584 45.0
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 6.5e-94 349.0 582 44.0
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 4.4e-90 336.3 591 42.5
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.8e-89 333.6 578 41.9
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 4.5e-87 326.2 608 41.4
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 2.8e-81 307.0 613 40.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 6.3e-81 305.8 595 39.8
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.1e-80 305.1 561 42.1
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-80 304.7 597 41.0
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.6e-79 301.2 631 38.5
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.7e-78 297.7 637 40.2
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.5e-77 293.9 567 42.0
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.5e-77 292.0 608 38.0
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 1.6e-76 291.2 584 38.9
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.6e-76 290.0 614 37.3
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.6e-76 290.0 539 39.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 8.9e-75 285.4 614 37.8
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.2e-74 285.0 618 35.8
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 3.4e-74 283.5 683 35.7
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 3.4e-74 283.5 559 38.5
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 5.7e-74 282.7 621 36.4
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 5.7e-74 282.7 614 37.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.8e-72 277.7 601 37.8
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.1e-72 276.6 613 36.5
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 5.4e-72 276.2 324 51.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 9.2e-72 275.4 627 34.0
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.2e-71 275.0 628 36.9
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-71 275.0 599 37.7
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.7e-71 273.9 309 51.8
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 4.6e-71 273.1 348 50.0
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 4.6e-71 273.1 561 37.3
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 1.7e-70 271.2 679 35.1
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 3.9e-70 270.0 553 37.1
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 5.0e-70 269.6 625 37.3
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.6e-70 269.2 542 40.4
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 6.6e-70 269.2 304 51.6
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.5e-69 268.1 585 37.8
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.9e-69 267.7 280 63.9
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 2.5e-69 267.3 293 53.6
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 4.3e-69 266.5 675 33.8
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 5.6e-69 266.2 621 39.6
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.2e-68 265.0 623 35.3
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.6e-68 264.6 572 37.8
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 2.1e-68 264.2 596 36.2
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.1e-68 264.2 535 37.4
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 3.6e-68 263.5 608 38.5
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 4.7e-68 263.1 609 36.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 6.2e-68 262.7 299 54.2
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 8.0e-68 262.3 580 36.9
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.3e-67 260.8 636 34.4
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 2.3e-67 260.8 616 35.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.0e-67 260.0 299 53.5
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.0e-67 260.0 585 36.2
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 5.2e-67 259.6 655 34.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.5e-66 258.1 357 48.2
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.0e-66 257.7 614 36.0
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.4e-66 256.9 299 55.5
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 7.5e-66 255.8 596 39.1
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 9.8e-66 255.4 669 33.5
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.7e-65 254.6 336 55.4
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 2.2e-65 254.2 316 52.2
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.2e-65 254.2 691 36.6
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.9e-65 253.8 260 56.2
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 3.7e-65 253.4 680 33.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 7.0e-64 249.2 687 33.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 9.2e-64 248.8 639 36.5
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.6e-63 248.1 654 33.8
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.6e-63 246.5 564 37.1
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 4.6e-63 246.5 616 36.4
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 6.0e-63 246.1 663 32.3
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 3.0e-62 243.8 267 54.3
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 3.9e-62 243.4 272 53.3
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.1e-61 241.9 635 35.7
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.1e-61 241.9 626 37.2
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.5e-61 241.5 612 35.5
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 4.7e-60 236.5 582 33.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.1e-59 235.3 567 35.6
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.4e-59 235.0 595 33.6
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 5.2e-59 233.0 566 38.2
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-58 231.5 592 33.1
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.0e-58 231.1 636 31.9
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 7.5e-58 229.2 603 34.0
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 9.8e-58 228.8 603 34.5
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.2e-57 227.6 605 34.4
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.9e-56 224.6 561 33.5
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.4e-56 224.2 584 38.7
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.2e-56 223.8 278 47.5
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.2e-55 221.9 372 41.9
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.6e-55 221.5 659 34.7
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 7.8e-55 219.2 598 32.6
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 7.8e-55 219.2 316 43.7
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.0e-54 218.8 587 32.9
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 6.6e-54 216.1 585 33.5
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-53 214.9 513 35.5
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 2.5e-53 214.2 537 33.1
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 4.3e-53 213.4 493 33.5
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.0e-51 206.8 276 47.5
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.0e-51 206.8 276 47.5
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 4.4e-50 203.4 605 32.6
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.2e-49 201.1 494 37.0
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 6.4e-49 199.5 608 35.5
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.6e-47 194.9 617 31.1
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 5.6e-45 186.4 338 40.2
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 8.9e-43 179.1 525 31.8
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 7.6e-42 176.0 406 37.9
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 9.9e-42 175.6 588 30.8
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.3e-41 175.3 558 33.2
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.7e-41 174.9 219 51.1
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 4.9e-41 173.3 539 30.2
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 6.4e-41 172.9 219 50.7
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.4e-40 171.0 640 30.3
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 6.6e-38 162.9 367 35.4
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 1.9e-37 161.4 421 33.5
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.6e-36 158.3 376 34.3
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.6e-36 157.1 187 50.8
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 4.8e-36 156.8 429 31.2
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 9.0e-35 152.5 446 33.4
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 7.6e-34 149.4 319 33.5
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.9e-32 144.8 296 35.5
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.4e-32 144.4 282 34.8
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 2.3e-30 137.9 621 27.9
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.1e-28 131.3 556 31.1
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.5e-26 123.6 240 37.1
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 9.9e-26 122.5 302 29.5
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.7e-23 114.4 173 53.2
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-22 112.1 261 31.8
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.9e-22 110.5 491 25.1
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.7e-22 109.8 190 36.8
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 6.9e-19 99.8 91 59.3
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-18 98.6 238 39.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 2.9e-17 94.4 79 59.5
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.9e-16 91.7 330 25.5
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 7.1e-16 89.7 186 39.2
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 1.2e-15 89.0 225 40.9
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-14 85.5 187 33.7
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 2.3e-14 84.7 122 43.4
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 3.9e-14 84.0 57 71.9
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 2.5e-13 81.3 201 32.3
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.7e-13 80.1 136 37.5
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.8e-12 77.8 62 64.5
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-11 75.5 121 42.1
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 2.0e-10 71.6 85 54.1
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 4.5e-10 70.5 85 52.9
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.6e-10 69.7 124 41.1
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 7.6e-10 69.7 76 57.9
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 1.0e-09 69.3 48 75.0
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 1.0e-09 69.3 48 75.0
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 1.3e-09 68.9 96 45.8
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 1.7e-09 68.6 62 59.7
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 2.9e-09 67.8 174 29.9
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 5.0e-09 67.0 48 72.9
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 6.5e-09 66.6 81 51.9
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 1.4e-08 65.5 48 70.8
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.2e-08 63.9 97 41.2
CARHR293790 Cardamine hirsuta HOM05D004018 ORTHO05D009829 5.5e-08 63.5 68 51.5
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 9.3e-08 62.8 95 41.1
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 3.6e-07 60.8 258 24.0
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 6.1e-07 60.1 103 39.8
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 8.7e-06 56.2 46 50.0
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 8.7e-06 56.2 46 50.0


User provided reference genes

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