Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12955 Brassica carinata HOM05D002208 ORTHO05D002333 8.9e-14 79.7 38 100.0
BcaC07g38948 Brassica carinata HOM05D002208 ORTHO05D002333 8.9e-14 79.7 38 100.0
C03p37350 Brassica napus HOM05D002208 ORTHO05D040179 8.9e-14 79.7 38 100.0
BolC8t49519H Brassica oleracea HOM05D002208 ORTHO05D002333 1.7e-12 75.5 36 100.0
BraA08t34953Z Brassica rapa HOM05D002208 ORTHO05D002333 1.7e-12 75.5 36 100.0
Sp1g16780 Schrenkiella parvula HOM05D002208 ORTHO05D002333 1.9e-11 72.0 37 91.9
Thhalv10008524m.g Eutrema salsugineum HOM05D002208 ORTHO05D002333 4.1e-11 70.9 37 89.2
Aa31LG7G3580 Aethionema arabicum HOM05D002208 ORTHO05D002333 5.4e-11 70.5 37 89.2
THA.LOC104813877 Tarenaya hassleriana HOM05D002208 ORTHO05D002333 1.2e-10 69.3 38 84.2
BcaB07g31895 Brassica carinata HOM05D002208 ORTHO05D002333 1.6e-10 68.9 37 83.8
BcaB07g31897 Brassica carinata HOM05D002208 ORTHO05D002333 1.6e-10 68.9 37 83.8
CARHR067840 Cardamine hirsuta HOM05D002208 ORTHO05D002333 2.7e-10 68.2 37 86.5
Thhalv10019016m.g Eutrema salsugineum HOM05D002208 ORTHO05D002333 2.7e-10 68.2 37 86.5
AT1G74560 Arabidopsis thaliana HOM05D002208 ORTHO05D002333 6.0e-10 67.0 37 83.8
Carub.0002s2136 Capsella rubella HOM05D002208 ORTHO05D002333 6.0e-10 67.0 37 83.8
A08p30190 Brassica napus HOM05D002208 ORTHO05D002333 1.0e-09 66.2 31 100.0
C08p18930 Brassica napus HOM05D002208 ORTHO05D002333 1.0e-09 66.2 31 100.0
Carub.0001s1844 Capsella rubella HOM05D002208 ORTHO05D002333 1.7e-09 65.5 38 84.2
Cpa.g.sc1815.1 Carica papaya HOM05D002208 ORTHO05D002333 1.7e-09 65.5 38 73.7
Duzib084G0290 Durio zibethinus HOM05D002208 ORTHO05D002333 2.3e-09 65.1 31 93.5
Hund02658 Selenicereus undatus HOM05D002208 ORTHO05D002333 2.3e-09 65.1 31 93.5
BcaB07g32214 Brassica carinata HOM05D002208 ORTHO05D002333 3.0e-09 64.7 37 78.4
BcaC05g25778 Brassica carinata HOM05D002208 ORTHO05D002333 3.0e-09 64.7 35 82.9
Duzib205G0292 Durio zibethinus HOM05D002208 ORTHO05D002333 3.9e-09 64.3 38 78.9
EL10Ac5g10983 Beta vulgaris HOM05D002208 ORTHO05D002333 5.0e-09 63.9 31 90.3
CSS0009926 Camellia sinensis var. sinensis HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
CSS0035370 Camellia sinensis var. sinensis HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
CANSAT80G1267 Cannabis sativa HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
Duzib068G0159 Durio zibethinus HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
Gohir.A03G066000 Gossypium hirsutum HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
Gohir.A03G066100 Gossypium hirsutum HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
Gohir.D03G092600 Gossypium hirsutum HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
Gorai.003G096300 Gossypium raimondii HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
Gorai.003G096500 Gossypium raimondii HOM05D002208 ORTHO05D002333 5.0e-09 63.9 38 78.9
Oeu010874.1 Olea europaea HOM05D002208 ORTHO05D002333 5.0e-09 63.9 31 90.3
Dinv19954 Davidia involucrata HOM05D002208 ORTHO05D002333 6.6e-09 63.5 37 81.1
Dinv38697 Davidia involucrata HOM05D002208 ORTHO05D002333 6.6e-09 63.5 38 76.3
Gohir.A07G063700 Gossypium hirsutum HOM05D002208 ORTHO05D002333 6.6e-09 63.5 37 81.1
Gohir.D07G068500 Gossypium hirsutum HOM05D002208 ORTHO05D002333 6.6e-09 63.5 37 81.1
Gorai.001G072000 Gossypium raimondii HOM05D002208 ORTHO05D002333 6.6e-09 63.5 37 81.1
Hma1.2p1_0735F.1_g210550 Hydrangea macrophylla HOM05D002208 ORTHO05D002333 8.6e-09 63.2 38 76.3
Lsat_1_v5_gn_1_13261 Lactuca sativa HOM05D002208 ORTHO05D002333 8.6e-09 63.2 36 77.8
Nitab4.5_0000026g0060 Nicotiana tabacum HOM05D002208 ORTHO05D002333 8.6e-09 63.2 38 76.3
Nitab4.5_0005983g0040 Nicotiana tabacum HOM05D002208 ORTHO05D002333 8.6e-09 63.2 38 76.3
Hund09355 Selenicereus undatus HOM05D002208 ORTHO05D002333 8.6e-09 63.2 31 90.3
COL.COLO4_24534 Corchorus olitorius HOM05D002208 ORTHO05D002333 1.1e-08 62.8 38 76.3
Eucgr.B00479 Eucalyptus grandis HOM05D002208 ORTHO05D002333 1.1e-08 62.8 37 75.7
Oeu022204.1 Olea europaea HOM05D002208 ORTHO05D002333 1.1e-08 62.8 38 76.3
QL10p016583 Quercus lobata HOM05D002208 ORTHO05D002333 1.1e-08 62.8 37 78.4
GSVIVG01008022001 Vitis vinifera HOM05D002208 ORTHO05D002333 1.1e-08 62.8 38 71.1
Cfa018956 Carpinus fangiana HOM05D002208 ORTHO05D002333 1.5e-08 62.4 38 73.7
HanXRQChr02g0041081 Helianthus annuus HOM05D002208 ORTHO05D002333 1.5e-08 62.4 38 76.3
Sc10g0009910 Simmondsia chinensis HOM05D002208 ORTHO05D002333 1.5e-08 62.4 31 87.1
CiPaw.11G043100 Carya illinoinensis HOM05D002208 ORTHO05D002333 1.9e-08 62.0 38 73.7
Gohir.A11G030791 Gossypium hirsutum HOM05D002208 ORTHO05D002333 1.9e-08 62.0 37 78.4
Gohir.D11G034100 Gossypium hirsutum HOM05D002208 ORTHO05D002333 1.9e-08 62.0 37 78.4
Gorai.007G036900 Gossypium raimondii HOM05D002208 ORTHO05D002333 1.9e-08 62.0 37 78.4
HanXRQChr09g0270731 Helianthus annuus HOM05D002208 ORTHO05D002333 1.9e-08 62.0 38 76.3
Nn3g17217 Nelumbo nucifera HOM05D002208 ORTHO05D002333 1.9e-08 62.0 38 73.7
TAR371G1291 Trochodendron aralioides HOM05D002208 ORTHO05D002333 1.9e-08 62.0 38 73.7
Atru.chr9.2263 Acer truncatum HOM05D002208 ORTHO05D002333 2.5e-08 61.6 38 76.3
AT1G18800 Arabidopsis thaliana HOM05D002208 ORTHO05D002333 2.5e-08 61.6 38 81.6
ECA247G0710 Erigeron canadensis HOM05D002208 ORTHO05D002333 2.5e-08 61.6 38 73.7
Migut.I00166 Erythranthe guttata HOM05D002208 ORTHO05D002333 2.5e-08 61.6 30 90.0
Lj5A112G61 Lonicera japonica HOM05D002208 ORTHO05D002333 2.5e-08 61.6 38 71.1
TAR629G3454 Trochodendron aralioides HOM05D002208 ORTHO05D002333 2.5e-08 61.6 38 73.7
Aa31LG4G4810 Aethionema arabicum HOM05D002208 ORTHO05D002333 3.3e-08 61.2 44 72.7
Gohir.D03G092500 Gossypium hirsutum HOM05D002208 ORTHO05D002333 3.3e-08 61.2 38 76.3
MSTRG.9631 Avicennia marina HOM05D002208 ORTHO05D002333 4.3e-08 60.8 31 87.1
CiPaw.12G014000 Carya illinoinensis HOM05D002208 ORTHO05D002333 4.3e-08 60.8 37 73.0
TAR374G0323 Trochodendron aralioides HOM05D002208 ORTHO05D002333 4.3e-08 60.8 38 71.1
CARHR019450 Cardamine hirsuta HOM05D002208 ORTHO05D002333 7.3e-08 60.1 37 81.1
Haze_07338 Corylus avellana HOM05D002208 ORTHO05D002333 7.3e-08 60.1 38 71.1
TWI15G0563 Tripterygium wilfordii HOM05D002208 ORTHO05D002333 7.3e-08 60.1 38 73.7
TWI60G0412 Tripterygium wilfordii HOM05D002208 ORTHO05D002333 7.3e-08 60.1 37 75.7
TAR622G0098 Trochodendron aralioides HOM05D002208 ORTHO05D002333 7.3e-08 60.1 38 71.1
Prupe.5G191400 Prunus persica HOM05D002208 ORTHO05D002333 9.5e-08 59.7 38 65.8
Sopen03g035140 Solanum pennellii HOM05D002208 ORTHO05D002333 9.5e-08 59.7 36 75.0
Phvul.003G190800 Phaseolus vulgaris HOM05D002208 ORTHO05D002333 1.2e-07 59.3 37 73.0
Dinv33751 Davidia involucrata HOM05D002208 ORTHO05D002333 1.6e-07 58.9 37 70.3
Eucgr.K02468 Eucalyptus grandis HOM05D002208 ORTHO05D002333 1.6e-07 58.9 31 80.6
Glyma.05G027300 Glycine max HOM05D002208 ORTHO05D002333 1.6e-07 58.9 30 83.3
Glyma.17G099200 Glycine max HOM05D002208 ORTHO05D002333 1.6e-07 58.9 37 73.0
Peaxi162Scf00103g00113 Petunia axillaris HOM05D002208 ORTHO05D002333 1.6e-07 58.9 40 70.0
Potri.004G128701 Populus trichocarpa HOM05D002208 ORTHO05D002333 1.6e-07 58.9 36 75.0
RcHm_v2.0_Chr7g0181051 Rosa chinensis HOM05D002208 ORTHO05D002333 1.6e-07 58.9 38 63.2
Sc12g0006300 Simmondsia chinensis HOM05D002208 ORTHO05D002333 1.6e-07 58.9 31 80.6
THA.LOC104812548 Tarenaya hassleriana HOM05D002208 ORTHO05D002333 1.6e-07 58.9 33 81.8
BcaB05g24859 Brassica carinata HOM05D002208 ORTHO05D002333 2.1e-07 58.5 33 81.8
Cfa007538 Carpinus fangiana HOM05D002208 ORTHO05D002333 2.1e-07 58.5 37 70.3
Ciclev10021771m.g Citrus clementina HOM05D002208 ORTHO05D002333 2.1e-07 58.5 38 73.7
Haze_14548 Corylus avellana HOM05D002208 ORTHO05D002333 2.1e-07 58.5 37 70.3
Oeu047017.2 Olea europaea HOM05D002208 ORTHO05D002333 2.1e-07 58.5 38 73.7
Potri.017G080700 Populus trichocarpa HOM05D002208 ORTHO05D002333 2.1e-07 58.5 36 75.0
Sabra17G0072100 Salix brachista HOM05D002208 ORTHO05D002333 2.1e-07 58.5 36 75.0
SGA_v2.0_scaffold7G04070 Striga asiatica HOM05D002208 ORTHO05D002333 2.1e-07 58.5 33 81.8
CSS0029985 Camellia sinensis var. sinensis HOM05D002208 ORTHO05D002333 2.8e-07 58.2 31 80.6
CiPaw.03G027800 Carya illinoinensis HOM05D002208 ORTHO05D002333 2.8e-07 58.2 37 70.3
Dinv06540 Davidia involucrata HOM05D002208 ORTHO05D002333 2.8e-07 58.2 37 70.3
SalBow7G1407 Salvia bowleyana HOM05D002208 ORTHO05D002333 2.8e-07 58.2 31 80.6
VMungo1215G0373 Vigna mungo HOM05D002208 ORTHO05D002333 2.8e-07 58.2 37 70.3
CAN.G837.7 Capsicum annuum HOM05D002208 ORTHO05D002333 3.6e-07 57.8 36 72.2
FAN04G2256 Fragaria x ananassa HOM05D002208 ORTHO05D002333 3.6e-07 57.8 38 60.5
FAN08G2146 Fragaria x ananassa HOM05D002208 ORTHO05D002333 3.6e-07 57.8 38 60.5
FAN13G1964 Fragaria x ananassa HOM05D002208 ORTHO05D002333 3.6e-07 57.8 38 60.5
Lsat_1_v5_gn_5_20001 Lactuca sativa HOM05D002208 ORTHO05D002333 3.6e-07 57.8 38 71.1
Nitab4.5_0000023g0310 Nicotiana tabacum HOM05D002208 ORTHO05D002333 3.6e-07 57.8 38 68.4
Sed0018112 Sechium edule HOM05D002208 ORTHO05D002333 3.6e-07 57.8 37 70.3
Sopen12g027460 Solanum pennellii HOM05D002208 ORTHO05D002333 3.6e-07 57.8 38 68.4
TWI81G0026 Tripterygium wilfordii HOM05D002208 ORTHO05D002333 3.6e-07 57.8 37 70.3
MSTRG.11387 Avicennia marina HOM05D002208 ORTHO05D002333 4.7e-07 57.4 29 86.2
Actinidia04903 Actinidia chinensis HOM05D002208 ORTHO05D002333 6.2e-07 57.0 38 68.4
FvH4_5g15130 Fragaria vesca HOM05D002208 ORTHO05D002333 6.2e-07 57.0 38 60.5
FAN18G4204 Fragaria x ananassa HOM05D002208 ORTHO05D002333 6.2e-07 57.0 38 60.5
MD14G1198400 Malus domestica HOM05D002208 ORTHO05D002333 6.2e-07 57.0 33 69.7
unitig_0.g779 Utricularia gibba HOM05D002208 ORTHO05D002333 6.2e-07 57.0 31 80.6
unitig_26.g9642 Utricularia gibba HOM05D002208 ORTHO05D002333 6.2e-07 57.0 37 70.3
Actinidia17545 Actinidia chinensis HOM05D002208 ORTHO05D002333 8.1e-07 56.6 37 67.6
PGR044G1847 Punica granatum HOM05D002208 ORTHO05D002333 8.1e-07 56.6 28 89.3
ECA246G4691 Erigeron canadensis HOM05D002208 ORTHO05D002333 1.1e-06 56.2 38 65.8
MD06G1191900 Malus domestica HOM05D002208 ORTHO05D002333 1.1e-06 56.2 37 62.2
Cc04_g16820 Coffea canephora HOM05D002208 ORTHO05D002333 1.4e-06 55.8 38 63.2
Cc07_g03300 Coffea canephora HOM05D002208 ORTHO05D002333 1.4e-06 55.8 38 71.1
MBI02_g23684_MAGBIO Magnolia biondii HOM05D002208 ORTHO05D002333 1.4e-06 55.8 36 69.4
PGR083G1391 Punica granatum HOM05D002208 ORTHO05D002333 1.4e-06 55.8 37 62.2
SEGI_05816 Sequoiadendron giganteum HOM05D002208 ORTHO05D002333 1.4e-06 55.8 28 85.7
SEGI_14395 Sequoiadendron giganteum HOM05D002208 ORTHO05D002333 1.4e-06 55.8 36 72.2
CAN.G628.24 Capsicum annuum HOM05D002208 ORTHO05D002333 1.8e-06 55.5 37 67.6
CsaV3_1G005360 Cucumis sativus L. HOM05D002208 ORTHO05D002333 1.8e-06 55.5 37 64.9
AagrBONN_evm.TU.Sc2ySwM_228.3766 Anthoceros agrestis HOM05D002208 ORTHO05D002333 2.3e-06 55.1 28 89.3
CANSAT64G2779 Cannabis sativa HOM05D002208 ORTHO05D002333 2.3e-06 55.1 31 74.2
RcHm_v2.0_Chr2g0168701 Rosa chinensis HOM05D002208 ORTHO05D002333 2.3e-06 55.1 37 70.3
DCAR_016543 Daucus carota HOM05D002208 ORTHO05D002333 3.1e-06 54.7 38 68.4
Thhalv10019538m.g Eutrema salsugineum HOM05D002208 ORTHO05D002333 3.1e-06 54.7 30 83.3
MBI05_g35445_MAGBIO Magnolia biondii HOM05D002208 ORTHO05D002333 3.1e-06 54.7 35 68.6
PSO017G0376 Papaver somniferum HOM05D002208 ORTHO05D002333 3.1e-06 54.7 28 78.6
PSO478G2432 Papaver somniferum HOM05D002208 ORTHO05D002333 3.1e-06 54.7 28 78.6
Sed0018970 Sechium edule HOM05D002208 ORTHO05D002333 3.1e-06 54.7 37 62.2
Oeu000928.2 Olea europaea HOM05D002208 ORTHO05D002333 4.0e-06 54.3 37 64.9
vmacro18194 Vaccinium macrocarpon HOM05D002208 ORTHO05D002333 4.0e-06 54.3 37 67.6
HPP92_013055 Vanilla planifolia HOM05D002208 ORTHO05D002333 4.0e-06 54.3 30 76.7
HPP92_013063 Vanilla planifolia HOM05D002208 ORTHO05D040179 4.0e-06 54.3 30 76.7
arahy.Tifrunner.gnm1.ann1.XR645Q Arachis hypogaea HOM05D002208 ORTHO05D002333 5.2e-06 53.9 30 80.0
A06p15010 Brassica napus HOM05D002208 ORTHO05D002333 5.2e-06 53.9 34 76.5
Ciclev10012281m.g Citrus clementina HOM05D002208 ORTHO05D002333 5.2e-06 53.9 31 77.4
MELO3C021984.2 Cucumis melo HOM05D002208 ORTHO05D002333 5.2e-06 53.9 30 73.3
CsaV3_5G037970 Cucumis sativus L. HOM05D002208 ORTHO05D002333 5.2e-06 53.9 30 73.3
Lalb_Chr07g0177991 Lupinus albus HOM05D002208 ORTHO05D002333 5.2e-06 53.9 36 63.9
Oeu016165.2 Olea europaea HOM05D002208 ORTHO05D002333 5.2e-06 53.9 37 64.9
Prupe.3G268700 Prunus persica HOM05D002208 ORTHO05D002333 5.2e-06 53.9 36 66.7
QL02p081670 Quercus lobata HOM05D002208 ORTHO05D002333 5.2e-06 53.9 35 71.4
DCAR_021659 Daucus carota HOM05D002208 ORTHO05D002333 6.8e-06 53.5 37 62.2
Migut.D01826 Erythranthe guttata HOM05D002208 ORTHO05D002333 6.8e-06 53.5 32 78.1
FvH4_6g48871 Fragaria vesca HOM05D002208 ORTHO05D002333 6.8e-06 53.5 37 67.6
VMungo1309G1659 Vigna mungo HOM05D002208 ORTHO05D002333 6.8e-06 53.5 30 73.3
ClCG09G018310 Citrullus lanatus HOM05D002208 ORTHO05D002333 8.9e-06 53.1 37 62.2
Phvul.009G188000 Phaseolus vulgaris HOM05D002208 ORTHO05D002333 8.9e-06 53.1 37 62.2
Sopen02g016510 Solanum pennellii HOM05D002208 ORTHO05D002333 8.9e-06 53.1 35 68.6
PGSC0003DMG400006933 Solanum tuberosum HOM05D002208 ORTHO05D002333 8.9e-06 53.1 35 68.6


User provided reference genes

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