Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p37150 Brassica napus HOM05D001764 ORTHO05D033285 3.7e-32 141.0 73 100.0
Sp5g29550 Schrenkiella parvula HOM05D001764 ORTHO05D001946 5.9e-14 80.5 51 78.4
Carub.0002s2116 Capsella rubella HOM05D001764 ORTHO05D001946 3.9e-13 77.8 51 76.5
AL2G34240 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 5.0e-13 77.4 51 76.5
Thhalv10018430m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 1.5e-12 75.9 51 76.5
C06p48550 Brassica napus HOM05D001764 ORTHO05D001946 1.9e-12 75.5 51 76.5
BolC6t39884H Brassica oleracea HOM05D001764 ORTHO05D001946 1.9e-12 75.5 51 76.5
BraA07t31565Z Brassica rapa HOM05D001764 ORTHO05D001946 1.9e-12 75.5 51 76.5
A07p40200 Brassica napus HOM05D001764 ORTHO05D001946 2.5e-12 75.1 51 74.5
BcaC08g47002 Brassica carinata HOM05D001764 ORTHO05D001946 3.3e-12 74.7 51 76.5
CARHR067650 Cardamine hirsuta HOM05D001764 ORTHO05D001946 4.3e-12 74.3 50 76.0
AT1G74390 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 5.6e-12 73.9 50 78.0
Thhalv10029428m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 3.6e-11 71.2 51 70.6
THA.LOC104812092 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 2.3e-10 68.6 54 70.4
Aa31LG4G4640 Aethionema arabicum HOM05D001764 ORTHO05D001946 3.1e-10 68.2 51 70.6
Nitab4.5_0001211g0320 Nicotiana tabacum HOM05D001764 ORTHO05D001946 6.8e-10 67.0 51 68.6
Nitab4.5_0005900g0080 Nicotiana tabacum HOM05D001764 ORTHO05D001946 2.6e-09 65.1 51 66.7
CAN.G479.64 Capsicum annuum HOM05D001764 ORTHO05D001946 7.5e-09 63.5 51 62.7
PGSC0003DMG400019519 Solanum tuberosum HOM05D001764 ORTHO05D001946 9.8e-09 63.2 51 64.7
Solyc03g115780.2 Solanum lycopersicum HOM05D001764 ORTHO05D001946 1.7e-08 62.4 51 60.8
Sopen03g034760 Solanum pennellii HOM05D001764 ORTHO05D001946 1.7e-08 62.4 51 60.8
Atru.chr9.148 Acer truncatum HOM05D001764 ORTHO05D001946 2.2e-08 62.0 63 57.1
QL10p017630 Quercus lobata HOM05D001764 ORTHO05D001946 2.2e-08 62.0 51 60.8
Rhsim12G0154300 Rhododendron simsii HOM05D001764 ORTHO05D001946 2.2e-08 62.0 50 66.0
Haze_07296 Corylus avellana HOM05D001764 ORTHO05D001946 3.7e-08 61.2 50 66.0
HanXRQChr05g0155001 Helianthus annuus HOM05D001764 ORTHO05D001946 3.7e-08 61.2 51 60.8
Lsat_1_v5_gn_5_21501 Lactuca sativa HOM05D001764 ORTHO05D001946 4.9e-08 60.8 51 62.7
Lj4g0015220 Lotus japonicus HOM05D001764 ORTHO05D001946 4.9e-08 60.8 50 62.0
Solyc12g036220.3 Solanum lycopersicum HOM05D001764 ORTHO05D001946 4.9e-08 60.8 51 58.8
Sopen12g016340 Solanum pennellii HOM05D001764 ORTHO05D001946 4.9e-08 60.8 51 58.8
PGSC0003DMG400021936 Solanum tuberosum HOM05D001764 ORTHO05D001946 4.9e-08 60.8 51 58.8
Dinv38741 Davidia involucrata HOM05D001764 ORTHO05D001946 6.4e-08 60.5 51 62.7
Cpa.g.sc111.56 Carica papaya HOM05D001764 ORTHO05D001946 8.3e-08 60.1 51 60.8
vmacro16525 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 8.3e-08 60.1 46 67.4
ClCG06G016030 Citrullus lanatus HOM05D001764 ORTHO05D001946 1.1e-07 59.7 51 60.8
PGR083G1358 Punica granatum HOM05D001764 ORTHO05D001946 1.1e-07 59.7 50 60.0
QL93p0356_0066 Quercus lobata HOM05D001764 ORTHO05D001946 1.1e-07 59.7 51 58.8
TPR.G35116 Trifolium pratense HOM05D001764 ORTHO05D001946 1.1e-07 59.7 50 62.0
MSTRG.23004 Avicennia marina HOM05D001764 ORTHO05D001946 1.4e-07 59.3 51 60.8
CAN.G847.2 Capsicum annuum HOM05D001764 ORTHO05D001946 1.4e-07 59.3 51 56.9
arahy.Tifrunner.gnm1.ann1.W39VMW Arachis hypogaea HOM05D001764 ORTHO05D001946 1.9e-07 58.9 50 62.0
arahy.Tifrunner.gnm1.ann1.YU35ML Arachis hypogaea HOM05D001764 ORTHO05D001946 1.9e-07 58.9 50 62.0
Lj9A466T76 Lonicera japonica HOM05D001764 ORTHO05D001946 1.9e-07 58.9 51 60.8
Oeu047277.1 Olea europaea HOM05D001764 ORTHO05D001946 1.9e-07 58.9 51 60.8
Peaxi162Scf00274g00352 Petunia axillaris HOM05D001764 ORTHO05D001946 1.9e-07 58.9 43 69.8
Actinidia37612 Actinidia chinensis HOM05D001764 ORTHO05D001946 2.4e-07 58.5 51 56.9
CANSAT78G1062 Cannabis sativa HOM05D001764 ORTHO05D001946 2.4e-07 58.5 53 62.3
MELO3C017188.2 Cucumis melo HOM05D001764 ORTHO05D001946 2.4e-07 58.5 51 58.8
CsaV3_1G002520 Cucumis sativus L. HOM05D001764 ORTHO05D001946 2.4e-07 58.5 51 58.8
MD14G1204400 Malus domestica HOM05D001764 ORTHO05D001946 2.4e-07 58.5 54 55.6
Rhsim08G0152300 Rhododendron simsii HOM05D001764 ORTHO05D001946 2.4e-07 58.5 52 61.5
Sabra15G0087100 Salix brachista HOM05D001764 ORTHO05D001946 2.4e-07 58.5 54 57.4
Prupe.5G197500 Prunus persica HOM05D001764 ORTHO05D001946 3.2e-07 58.2 51 60.8
Gorai.008G195300 Gossypium raimondii HOM05D001764 ORTHO05D001946 4.1e-07 57.8 51 56.9
Ciclev10019755m.g Citrus clementina HOM05D001764 ORTHO05D001946 5.4e-07 57.4 50 58.0
Eucgr.B00534 Eucalyptus grandis HOM05D001764 ORTHO05D001946 5.4e-07 57.4 51 58.8
Gohir.D12G182000 Gossypium hirsutum HOM05D001764 ORTHO05D001946 5.4e-07 57.4 51 56.9
MD14G1204300 Malus domestica HOM05D001764 ORTHO05D001946 5.4e-07 57.4 54 55.6
Cc04_g15180 Coffea canephora HOM05D001764 ORTHO05D001946 7.0e-07 57.0 51 58.8
Migut.I00208 Erythranthe guttata HOM05D001764 ORTHO05D001946 7.0e-07 57.0 51 54.9
Nitab4.5_0001195g0030 Nicotiana tabacum HOM05D001764 ORTHO05D001946 7.0e-07 57.0 51 58.8
Nitab4.5_0001997g0090 Nicotiana tabacum HOM05D001764 ORTHO05D001946 7.0e-07 57.0 51 58.8
ECA246G0801 Erigeron canadensis HOM05D001764 ORTHO05D001946 9.2e-07 56.6 51 56.9
MD06G1197200 Malus domestica HOM05D001764 ORTHO05D001946 9.2e-07 56.6 51 58.8
vmacro17569 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 9.2e-07 56.6 51 56.9
GSVIVG01007971001 Vitis vinifera HOM05D001764 ORTHO05D001946 9.2e-07 56.6 51 58.8
Actinidia19021 Actinidia chinensis HOM05D001764 ORTHO05D001946 1.2e-06 56.2 51 56.9
Cfa018913 Carpinus fangiana HOM05D001764 ORTHO05D001946 1.2e-06 56.2 43 62.8
CiPaw.12G011800 Carya illinoinensis HOM05D001764 ORTHO05D001946 1.2e-06 56.2 50 56.0
Dinv10651 Davidia involucrata HOM05D001764 ORTHO05D001946 1.2e-06 56.2 51 58.8
MD14G1204100 Malus domestica HOM05D001764 ORTHO05D001946 1.2e-06 56.2 51 56.9
THA.LOC104818322 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 1.2e-06 56.2 51 56.9
CSS0024538 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 1.6e-06 55.8 50 54.0
CSS0038271 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 1.6e-06 55.8 50 54.0
CDE09G0781 Ceratophyllum demersum HOM05D001764 ORTHO05D001946 1.6e-06 55.8 51 56.9
HanXRQChr08g0236671 Helianthus annuus HOM05D001764 ORTHO05D001946 1.6e-06 55.8 51 54.9
Lj5A108T58 Lonicera japonica HOM05D001764 ORTHO05D001946 1.6e-06 55.8 51 58.8
QL10p017602 Quercus lobata HOM05D001764 ORTHO05D001946 1.6e-06 55.8 51 52.9
Ca_21809_v3 Cicer arietinum L. HOM05D001764 ORTHO05D001946 2.0e-06 55.5 50 58.0
FvH4_5g14590 Fragaria vesca HOM05D001764 ORTHO05D001946 2.0e-06 55.5 51 54.9
Nn4g23270 Nelumbo nucifera HOM05D001764 ORTHO05D001946 2.0e-06 55.5 51 58.8
Glyma.17G102100 Glycine max HOM05D001764 ORTHO05D001946 2.7e-06 55.1 50 58.0
Lsat_1_v5_gn_4_109301 Lactuca sativa HOM05D001764 ORTHO05D001946 2.7e-06 55.1 51 56.9
Manes.14G081400 Manihot esculenta HOM05D001764 ORTHO05D001946 2.7e-06 55.1 50 62.0
Sed0004706 Sechium edule HOM05D001764 ORTHO05D001946 2.7e-06 55.1 51 52.9
TWI81G0186 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 2.7e-06 55.1 50 54.0
Ciclev10020652m.g Citrus clementina HOM05D001764 ORTHO05D001946 3.5e-06 54.7 50 56.0
FAN18G3859 Fragaria x ananassa HOM05D001764 ORTHO05D001946 3.5e-06 54.7 51 54.9
Sabra15G0087000 Salix brachista HOM05D001764 ORTHO05D001946 3.5e-06 54.7 54 55.6
TWI60G1593 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 3.5e-06 54.7 50 54.0
A10p29410 Brassica napus HOM05D001764 ORTHO05D001946 4.6e-06 54.3 50 58.0
BraA10t44985Z Brassica rapa HOM05D001764 ORTHO05D001946 4.6e-06 54.3 50 58.0
CiPaw.11G047000 Carya illinoinensis HOM05D001764 ORTHO05D001946 4.6e-06 54.3 53 58.5
Oeu052451.1 Olea europaea HOM05D001764 ORTHO05D001946 4.6e-06 54.3 51 54.9
BcaC06g32411 Brassica carinata HOM05D001764 ORTHO05D001946 6.0e-06 53.9 50 58.0
BcaC06g32500 Brassica carinata HOM05D001764 ORTHO05D001946 6.0e-06 53.9 50 58.0
C09p69790 Brassica napus HOM05D001764 ORTHO05D001946 6.0e-06 53.9 50 58.0
BolC9t59723H Brassica oleracea HOM05D001764 ORTHO05D001946 6.0e-06 53.9 50 58.0
CARHR205460 Cardamine hirsuta HOM05D001764 ORTHO05D033285 6.0e-06 53.9 49 57.1
Sed0016998 Sechium edule HOM05D001764 ORTHO05D001946 6.0e-06 53.9 51 52.9
CARHR205440 Cardamine hirsuta HOM05D001764 ORTHO05D001946 7.8e-06 53.5 50 56.0
Ciclev10019899m.g Citrus clementina HOM05D001764 ORTHO05D001946 7.8e-06 53.5 52 55.8
Lalb_Chr07g0178161 Lupinus albus HOM05D001764 ORTHO05D001946 7.8e-06 53.5 50 56.0
Nitab4.5_0000488g0080 Nicotiana tabacum HOM05D001764 ORTHO05D001946 7.8e-06 53.5 54 53.7
PGR004G1214 Punica granatum HOM05D001764 ORTHO05D001946 7.8e-06 53.5 51 51.0


User provided reference genes

Program Settings