Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 6.1e-103 377.5 190 100.0
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 1.2e-101 373.2 190 98.9
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 1.2e-101 373.2 190 98.9
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 4.9e-100 367.9 190 96.8
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 4.5e-98 361.3 190 95.8
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 5.7e-93 344.4 190 91.1
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 1.0e-81 307.0 189 83.1
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 2.3e-81 305.8 188 85.1
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 1.5e-80 303.1 189 83.1
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 1.9e-80 302.8 189 82.5
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 4.3e-80 301.6 188 82.4
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 2.1e-79 299.3 188 81.4
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 1.7e-76 289.7 188 79.3
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 1.1e-75 287.0 188 79.3
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 1.7e-73 279.6 189 77.2
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 4.9e-68 261.5 212 68.4
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 3.0e-57 225.7 194 63.9
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 1.3e-55 220.3 189 60.3
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 2.8e-55 219.2 203 58.6
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 3.6e-55 218.8 201 60.7
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 4.8e-55 218.4 140 76.4
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 4.8e-55 218.4 140 76.4
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.4e-54 216.9 140 76.4
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 1.8e-54 216.5 196 60.2
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 4.0e-54 215.3 139 76.3
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 5.3e-54 214.9 140 73.6
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 5.3e-54 214.9 127 76.4
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 6.9e-54 214.5 189 59.8
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 9.0e-54 214.2 188 61.2
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 9.0e-54 214.2 140 75.7
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 2.0e-53 213.0 197 60.4
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 2.0e-53 213.0 197 59.9
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 2.0e-53 213.0 185 60.0
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 4.4e-53 211.8 187 59.9
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 5.8e-53 211.5 194 59.3
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 7.6e-53 211.1 190 58.9
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 7.6e-53 211.1 197 59.9
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 1.3e-52 210.3 200 58.0
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 2.2e-52 209.5 140 72.9
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 2.9e-52 209.1 193 59.1
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 2.9e-52 209.1 198 60.1
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 4.9e-52 208.4 187 58.8
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 8.4e-52 207.6 187 58.8
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 1.1e-51 207.2 123 77.2
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 1.1e-51 207.2 129 72.9
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 1.4e-51 206.8 185 58.9
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 1.4e-51 206.8 126 74.6
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 1.4e-51 206.8 167 61.7
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 1.4e-51 206.8 124 75.0
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 1.4e-51 206.8 187 59.9
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 1.9e-51 206.5 136 70.6
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 2.4e-51 206.1 136 70.6
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 4.2e-51 205.3 137 71.5
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 5.4e-51 204.9 138 73.9
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 5.4e-51 204.9 165 64.2
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 5.4e-51 204.9 140 68.6
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 9.3e-51 204.1 193 58.5
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 9.3e-51 204.1 212 51.9
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 1.2e-50 203.8 141 67.4
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 1.6e-50 203.4 148 62.8
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.6e-50 203.4 161 65.8
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 1.6e-50 203.4 192 56.8
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.1e-50 203.0 150 64.0
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.1e-50 203.0 134 68.7
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 2.7e-50 202.6 141 68.1
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 3.5e-50 202.2 142 69.0
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 6.0e-50 201.4 124 71.8
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 6.0e-50 201.4 171 61.4
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 7.9e-50 201.1 176 59.1
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 1.0e-49 200.7 190 54.7
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 1.3e-49 200.3 145 66.9
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.3e-49 200.3 186 54.8
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 3.0e-49 199.1 198 56.1
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 3.0e-49 199.1 191 56.0
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 3.0e-49 199.1 204 52.5
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 5.1e-49 198.4 193 57.5
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 5.1e-49 198.4 150 63.3
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 5.1e-49 198.4 141 69.5
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 6.6e-49 198.0 181 56.4
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 6.6e-49 198.0 188 58.5
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 8.7e-49 197.6 173 61.8
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 1.1e-48 197.2 122 74.6
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.9e-48 196.4 189 57.1
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 1.9e-48 196.4 142 66.2
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.5e-48 196.1 184 54.3
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.5e-48 196.1 184 54.3
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 3.3e-48 195.7 179 58.1
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.3e-47 193.7 142 65.5
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.3e-47 193.7 195 54.4
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 2.1e-47 193.0 164 61.0
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 3.6e-47 192.2 136 66.9
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.8e-46 189.9 184 52.7
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 6.9e-46 188.0 163 58.9
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 9.0e-46 187.6 186 52.2
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.2e-45 187.2 149 61.7
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 2.0e-45 186.4 150 63.3
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 2.9e-44 182.6 197 51.3
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 3.2e-43 179.1 113 74.3
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 4.2e-43 178.7 112 74.1
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 5.5e-43 178.3 168 58.9
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 5.5e-43 178.3 137 60.6
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 1.3e-41 173.7 116 69.0
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 1.3e-41 173.7 179 49.7
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 6.7e-41 171.4 239 43.5
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 1.1e-40 170.6 166 54.8
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 1.5e-40 170.2 116 69.8
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 6.2e-39 164.9 93 84.9
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 5.3e-38 161.8 115 66.1
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 3.4e-37 159.1 129 57.4
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 5.8e-37 158.3 128 57.0
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 3.8e-36 155.6 122 63.1
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.1e-35 154.1 91 76.9
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 1.2e-34 150.6 159 55.3
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 3.3e-32 142.5 147 56.5
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 4.3e-32 142.1 109 60.6
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 2.1e-31 139.8 115 62.6
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 8.2e-31 137.9 89 68.5
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 1.4e-30 137.1 147 51.7
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 1.5e-29 133.7 109 58.7
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 2.0e-29 133.3 98 64.3
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 5.9e-29 131.7 145 44.8
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 1.7e-28 130.2 118 60.2
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 1.2e-26 124.0 73 75.3
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 8.7e-25 117.9 78 74.4
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 1.5e-24 117.1 179 39.1
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 1.8e-22 110.2 97 50.5
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 3.8e-20 102.4 111 45.0
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 3.3e-16 89.4 81 56.8
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 1.4e-14 84.0 167 31.1
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 4.5e-13 79.0 65 58.5
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 5.9e-13 78.6 54 64.8
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 3.6e-10 69.3 129 41.1
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 1.4e-06 57.4 42 61.9
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.4e-06 56.6 43 58.1
CARHR152490 Cardamine hirsuta HOM05D005819 ORTHO05D006780 4.1e-06 55.8 64 56.2


User provided reference genes

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