Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 8.5e-196 686.8 342 100.0
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.7e-191 672.5 337 99.1
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.7e-191 672.5 338 98.8
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 3.5e-181 638.3 349 91.1
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 3.5e-181 638.3 349 91.1
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 7.7e-181 637.1 349 90.8
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 7.7e-181 637.1 349 90.8
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 7.7e-181 637.1 349 90.8
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 2.5e-179 632.1 349 90.3
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-178 629.8 349 90.0
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.0e-177 626.7 349 90.3
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 1.7e-175 619.4 349 88.5
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.1e-174 615.1 349 87.1
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 7.0e-174 614.0 349 87.1
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 4.5e-173 611.3 349 86.8
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.7e-172 609.4 349 86.2
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 3.2e-171 605.1 349 86.5
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.9e-159 565.5 357 78.4
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.9e-159 565.5 357 78.7
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.5e-155 552.4 369 75.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 4.4e-136 488.4 334 71.3
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-134 483.8 338 69.8
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.1e-134 481.1 340 69.4
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 9.2e-134 480.7 331 71.6
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 4.6e-133 478.4 340 69.1
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.3e-132 476.9 341 69.2
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.7e-132 476.5 328 71.6
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.7e-132 476.5 338 68.0
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 3.0e-132 475.7 358 67.3
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 5.1e-132 474.9 329 69.6
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.3e-131 472.2 335 69.0
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 5.6e-131 471.5 352 65.3
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 7.3e-131 471.1 352 65.6
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 9.6e-131 470.7 330 70.3
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.6e-130 469.9 349 67.9
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.1e-130 469.5 353 65.4
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 6.2e-130 468.0 358 66.2
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.1e-129 467.2 338 67.8
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.8e-129 466.5 334 68.0
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.4e-129 466.1 329 68.7
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.2e-128 463.8 350 64.9
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.2e-128 463.8 341 66.9
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.5e-128 463.4 336 67.3
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 2.0e-128 463.0 358 64.2
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.6e-128 462.6 358 64.0
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.8e-128 461.5 358 64.2
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.7e-127 459.9 358 64.0
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 2.2e-127 459.5 355 65.1
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.9e-127 459.1 345 66.4
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.8e-127 458.8 352 63.6
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 3.8e-127 458.8 343 66.8
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 3.8e-127 458.8 332 66.3
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 8.4e-127 457.6 323 68.4
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 8.4e-127 457.6 349 64.2
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.4e-126 456.8 330 68.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 2.4e-126 456.1 366 63.4
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.4e-126 456.1 358 63.4
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.4e-126 456.1 360 65.3
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.2e-126 455.3 325 68.6
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 7.1e-126 454.5 343 65.6
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 7.1e-126 454.5 325 68.6
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.2e-125 453.8 355 64.8
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-125 453.8 349 64.2
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 2.7e-125 452.6 348 65.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 4.6e-125 451.8 334 65.0
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.0e-124 450.7 323 67.8
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 1.3e-124 450.3 352 63.1
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 3.9e-124 448.7 331 65.3
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 3.9e-124 448.7 343 64.7
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 5.1e-124 448.4 332 65.1
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 5.1e-124 448.4 332 65.1
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 5.1e-124 448.4 334 65.3
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 6.6e-124 448.0 336 65.2
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.9e-123 446.4 362 63.3
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 3.3e-123 445.7 349 63.3
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 7.3e-123 444.5 333 64.3
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 7.3e-123 444.5 327 66.4
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 7.3e-123 444.5 326 67.2
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 9.6e-123 444.1 345 66.1
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 2.1e-122 443.0 346 64.7
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.1e-122 443.0 340 65.0
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 4.8e-122 441.8 333 65.2
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 6.2e-122 441.4 332 63.9
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 2.4e-121 439.5 346 63.0
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.1e-121 439.1 327 67.6
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 4.0e-121 438.7 338 64.5
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 6.9e-121 438.0 338 64.5
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-120 436.8 223 96.4
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 2.0e-120 436.4 352 63.1
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 4.9e-119 431.8 332 62.3
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 4.9e-119 431.8 338 61.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.9e-118 429.9 334 63.8
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 2.4e-118 429.5 331 62.2
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 9.3e-118 427.6 337 63.2
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.6e-114 416.8 346 60.1
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.4e-113 413.7 356 57.9
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.4e-113 412.9 406 53.9
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 2.6e-112 409.5 323 61.0
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 2.9e-111 406.0 337 61.7
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.1e-110 404.1 349 59.0
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 2.4e-110 402.9 340 61.8
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 3.2e-110 402.5 204 96.1
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 5.5e-110 401.7 333 60.7
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 9.3e-110 401.0 336 58.9
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 9.3e-110 401.0 347 58.8
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 9.3e-110 401.0 347 58.8
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-109 400.2 203 95.6
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 7.9e-109 397.9 336 58.6
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 3.9e-108 395.6 221 88.2
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.1e-107 394.0 328 60.1
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.5e-107 393.7 291 66.3
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 5.3e-105 385.2 278 68.0
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 6.9e-105 384.8 278 67.6
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 9.0e-105 384.4 346 57.8
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 6.5e-103 378.3 334 56.6
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 1.3e-100 370.5 330 54.5
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.7e-98 362.5 331 54.1
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.1e-97 360.9 326 53.4
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.0e-95 354.4 335 54.0
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.2e-95 353.2 345 50.7
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.6e-93 347.1 325 51.1
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 1.0e-92 344.4 312 58.0
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.7e-90 335.9 242 70.2
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.1e-89 334.3 565 37.2
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.0e-87 327.8 328 53.7
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 7.2e-86 321.6 246 66.7
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 1.1e-83 314.3 260 61.9
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-81 307.8 328 51.8
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 3.1e-81 306.2 216 64.8
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 3.2e-78 296.2 357 46.2
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 4.7e-77 292.4 211 63.5
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.2e-72 277.7 213 62.0
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 4.5e-72 275.8 196 65.8
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.7e-63 247.3 325 43.1
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 6.8e-60 235.3 155 68.4
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.2e-59 234.6 274 51.1
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.5e-51 207.6 210 51.9
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.4e-49 201.1 197 56.9
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 4.5e-48 196.1 122 75.4
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 3.5e-40 169.9 90 87.8
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 6.0e-40 169.1 114 67.5
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 2.5e-38 163.7 178 52.8
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 2.6e-35 153.7 264 40.2
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 3.4e-35 153.3 133 59.4
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 6.4e-34 149.1 74 90.5
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 3.3e-30 136.7 284 33.1
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.3e-30 136.3 106 59.4
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 2.8e-29 133.7 313 31.9
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 6.2e-29 132.5 89 66.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-27 127.9 93 72.0
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 3.7e-26 123.2 93 68.8
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 4.1e-25 119.8 93 67.7
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.6e-21 107.8 159 40.3
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 1.5e-19 101.3 272 29.4
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-15 88.2 52 82.7
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-14 84.7 55 76.4
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.2e-13 81.6 310 27.7
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.4e-12 78.2 69 55.1


User provided reference genes

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