Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2632.1 1336 100.0
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2533.8 1331 96.8
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 2533.8 1331 96.8
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2486.8 1335 95.4
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2369.3 1333 90.3
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 2122.1 1328 81.7
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 2103.6 1330 81.2
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 2093.2 1318 81.4
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 2081.2 1311 81.7
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 0.0e+00 2006.1 1334 77.4
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1956.8 1312 75.9
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1651.0 1307 65.0
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1292.7 1306 53.7
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1217.6 1323 49.5
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1208.7 1323 49.4
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1207.6 1259 49.8
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1207.2 1315 50.2
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1189.5 1313 48.4
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1187.2 1315 48.7
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1181.4 1284 49.1
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1179.5 1315 48.4
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1178.7 1295 50.3
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1176.8 1290 49.0
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1176.0 1282 48.4
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1170.2 1282 49.5
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1170.2 1336 47.6
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1168.3 1297 48.0
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1159.4 1282 48.1
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1157.5 1281 48.7
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1152.1 1282 47.8
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1141.3 1326 47.4
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1139.8 1293 47.3
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1136.3 1428 45.0
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1132.9 1287 47.5
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1130.9 1306 47.9
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1120.9 1282 46.9
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1106.7 1279 47.5
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1105.1 1154 50.4
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1104.0 1297 45.8
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1099.0 1293 46.7
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1098.6 1283 46.8
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1095.5 1252 47.4
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1086.2 1295 45.3
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1084.7 1278 46.2
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1082.8 1292 45.7
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1082.4 1262 46.0
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.8e-311 1073.2 680 80.3
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 3.4e-309 1065.4 1252 46.4
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 4.3e-304 1048.5 1317 44.5
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 3.7e-303 1045.4 1285 45.6
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 3.1e-302 1042.3 1137 48.3
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 1.0e-300 1037.3 1291 45.5
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.6e-298 1028.9 1335 44.0
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 4.6e-298 1028.5 1269 45.2
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 6.1e-298 1028.1 1321 44.1
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 1.1e-296 1023.8 1276 44.9
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 4.3e-296 1021.9 1151 48.4
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 7.4e-296 1021.1 1312 44.7
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 1.5e-293 1013.4 1301 44.8
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 3.4e-293 1012.3 1330 44.0
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 5.9e-293 1011.5 1284 43.7
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 3.8e-292 1008.8 1153 47.3
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 3.9e-289 998.8 1291 42.5
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.6e-285 986.1 656 77.6
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 2.6e-285 986.1 1313 41.8
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 2.7e-282 976.1 1246 44.2
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 2.0e-280 969.9 1127 45.6
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 4.4e-280 968.8 1034 49.2
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 1.9e-275 953.4 1352 40.2
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 3.2e-275 952.6 1292 42.3
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 4.7e-274 948.7 1298 41.8
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 8.8e-273 944.5 1295 41.9
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 7.5e-272 941.4 1186 45.3
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 8.3e-271 937.9 1139 45.1
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 2.4e-270 936.4 1059 47.2
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.2e-264 917.5 1302 41.0
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 3.1e-262 909.4 1296 41.3
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 9.2e-262 907.9 1211 43.0
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.3e-260 904.0 1264 41.3
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 5.0e-260 902.1 1253 41.9
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 4.3e-259 899.0 1296 41.1
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 1.2e-258 897.5 1156 44.6
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 6.8e-257 891.7 922 51.2
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 4.9e-255 885.6 1272 40.5
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 5.0e-244 849.0 1279 39.6
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 3.2e-230 803.1 1122 40.5
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 2.8e-226 790.0 1030 43.2
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.6e-226 789.6 1004 43.9
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 3.0e-220 770.0 868 48.0
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.1e-211 741.5 1189 37.8
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 2.5e-203 713.8 1165 37.7
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 4.6e-189 666.4 866 42.4
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.8e-188 664.5 796 43.5
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 3.9e-188 663.3 1329 34.2
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 5.5e-182 642.9 753 46.2
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.3e-175 621.7 1003 36.8
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 2.6e-168 597.4 1038 37.2
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 2.1e-149 534.6 767 41.5
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.2e-144 518.8 580 48.3
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.6e-139 501.1 462 56.1
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 1.5e-134 485.3 646 42.9
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.8e-133 481.1 502 52.4
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 4.9e-122 443.7 396 59.6
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 3.5e-112 411.0 684 38.3
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 2.3e-111 408.3 476 48.5
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.3e-101 375.9 478 44.1
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 5.3e-92 344.0 1263 24.9
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.5e-91 342.4 1250 24.8
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 2.1e-72 278.9 160 90.0
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.7e-69 269.2 391 37.3
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 2.8e-69 268.5 603 32.3
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.4e-68 266.2 356 38.5
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 8.2e-61 240.4 355 36.6
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.3e-55 222.2 377 37.1
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 2.7e-48 198.7 110 91.8
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 1.3e-42 179.9 169 52.7
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.2e-42 179.1 290 34.5
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 2.9e-34 152.1 134 55.2
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 7.2e-33 147.5 191 45.5
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.6e-30 139.0 327 32.4
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 7.8e-27 127.5 136 47.8
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.7e-26 126.3 129 47.3
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 4.9e-21 108.2 476 22.3
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 9.2e-20 104.0 115 51.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.6e-16 93.2 168 30.4
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.2e-13 82.8 131 38.2
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 2.4e-12 79.3 120 35.8
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 5.4e-12 78.2 112 39.3
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.3e-10 73.6 116 38.8
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 1.1e-09 70.5 69 60.9
Pp3c5_2370 Physcomitrium patens HOM05D005651 ORTHO05D006877 7.3e-09 67.8 292 22.6
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.2e-08 67.0 58 55.2


User provided reference genes

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