Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-35 152.1 76 100.0
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-35 152.1 76 100.0
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-35 152.1 76 100.0
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 8.3e-35 149.8 76 98.7
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 8.3e-35 149.8 76 98.7
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 2.7e-33 144.8 76 94.7
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-32 140.6 76 90.8
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 5.0e-32 140.6 76 90.8
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 5.0e-32 140.6 76 90.8
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 92.1
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 90.8
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.5e-31 139.0 76 90.8
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 6.2e-30 133.7 76 89.5
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 6.2e-30 133.7 76 88.2
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 86.8
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 86.8
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 86.8
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 86.8
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 86.8
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 86.8
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.4e-29 132.5 76 88.2
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-28 129.4 76 84.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 1.5e-28 129.0 76 85.5
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 6.8e-21 103.6 76 71.1
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.4e-18 95.1 76 65.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.1e-18 94.4 76 63.2
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.2e-17 92.8 74 68.9
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.7e-16 89.0 89 57.3
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 3.0e-16 88.2 76 59.2
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 3.0e-16 88.2 74 66.2
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 3.9e-16 87.8 76 63.2
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.6e-16 87.0 74 63.5
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 6.6e-16 87.0 76 59.2
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 4.3e-15 84.3 74 62.2
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.3e-15 84.3 76 59.2
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.2e-14 82.8 70 60.0
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.1e-14 82.0 69 60.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.8e-14 81.6 72 61.1
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 3.6e-14 81.3 68 63.2
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 6.2e-14 80.5 76 60.5
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.4e-13 78.6 72 58.3
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.1e-13 78.2 68 55.9
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.1e-13 78.2 76 57.9
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.1e-13 78.2 61 63.9
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 4.0e-13 77.8 69 58.0
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.2e-13 77.4 73 57.5
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 5.2e-13 77.4 83 56.6
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 6.8e-13 77.0 81 55.6
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 8.9e-13 76.6 62 64.5
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.5e-12 75.9 64 64.1
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.0e-12 75.5 76 55.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.4e-12 74.7 68 57.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.4e-12 74.3 66 59.1
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.4e-12 74.3 66 59.1
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.8e-12 73.9 71 53.5
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.3e-11 72.8 74 55.4
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.2e-11 72.0 68 57.4
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.2e-11 72.0 77 54.5
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 2.9e-11 71.6 70 52.9
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.9e-11 71.6 70 60.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.8e-11 71.2 64 60.9
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.9e-11 70.9 68 55.9
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.9e-11 70.9 69 50.7
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 6.4e-11 70.5 68 55.9
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.4e-11 70.5 87 47.1
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.4e-11 70.5 87 47.1
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.4e-11 70.5 87 47.1
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.4e-11 70.5 63 60.3
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-10 69.7 70 55.7
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-10 69.7 70 55.7
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.1e-10 69.7 63 58.7
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.4e-10 69.3 65 53.8
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.9e-10 68.9 69 55.1
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.4e-10 68.6 69 50.7
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 3.2e-10 68.2 74 52.7
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.2e-10 68.2 70 51.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 4.1e-10 67.8 63 58.7
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 7.1e-10 67.0 61 59.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 7.1e-10 67.0 66 54.5
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 9.2e-10 66.6 64 59.4
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 9.2e-10 66.6 61 52.5
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.2e-09 66.2 60 58.3
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.2e-09 66.2 69 55.1
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 1.2e-09 66.2 61 59.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.6e-09 65.9 61 52.5
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.6e-09 65.9 73 50.7
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.6e-09 65.9 63 58.7
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.1e-09 65.5 62 56.5
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.7e-09 65.1 63 60.3
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.5e-09 64.7 64 57.8
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 3.5e-09 64.7 70 51.4
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 6.0e-09 63.9 63 57.1
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 6.0e-09 63.9 63 57.1
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 7.8e-09 63.5 61 59.0
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 7.8e-09 63.5 66 56.1
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-08 63.2 75 49.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-08 63.2 75 49.3
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.7e-08 62.4 62 53.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.7e-08 62.4 70 51.4
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.7e-08 62.4 63 54.0
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 3.0e-08 61.6 61 52.5
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.0e-08 61.6 61 50.8
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.0e-08 61.6 68 47.1
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.0e-08 61.6 68 47.1
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 3.9e-08 61.2 63 55.6
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 3.9e-08 61.2 63 55.6
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 3.9e-08 61.2 63 55.6
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 3.9e-08 61.2 63 55.6
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.9e-08 61.2 63 55.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.9e-08 61.2 61 57.4
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.9e-08 61.2 63 54.0
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 3.9e-08 61.2 66 53.0
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.9e-08 61.2 62 51.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 5.1e-08 60.8 63 50.8
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 5.1e-08 60.8 73 50.7
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 8.7e-08 60.1 62 51.6
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-07 59.7 63 54.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-07 59.7 63 54.0
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.1e-07 59.7 63 54.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.1e-07 59.7 63 54.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.1e-07 59.7 68 50.0
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.5e-07 59.3 63 52.4
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.5e-07 59.3 63 52.4
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 1.5e-07 59.3 52 57.7
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.5e-07 59.3 63 54.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.5e-07 59.3 63 49.2
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.5e-07 59.3 63 54.0
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 52.4
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 52.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.9e-07 58.9 64 51.6
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 2.5e-07 58.5 63 54.0
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 3.3e-07 58.2 77 48.1
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.3e-07 58.2 62 53.2
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 4.3e-07 57.8 63 50.8
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 4.3e-07 57.8 73 49.3
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 4.3e-07 57.8 73 49.3
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 4.3e-07 57.8 63 52.4
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.3e-07 57.8 63 54.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 5.6e-07 57.4 63 50.8
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 7.3e-07 57.0 61 49.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 7.3e-07 57.0 61 49.2
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 9.6e-07 56.6 67 50.7
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 9.6e-07 56.6 63 52.4
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.2e-06 56.2 62 51.6
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.2e-06 56.2 63 52.4
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.6e-06 55.8 63 52.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.1e-06 55.5 65 50.8
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.8e-06 55.1 64 48.4
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.8e-06 55.1 63 50.8
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.8e-06 55.1 45 62.2
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 3.6e-06 54.7 49 59.2
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 4.7e-06 54.3 50 56.0
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.7e-06 54.3 46 60.9
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 6.2e-06 53.9 64 50.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 49.2
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 47.6
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 8.1e-06 53.5 63 49.2


User provided reference genes

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