Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 4.8e-35 150.6 75 100.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 4.8e-35 150.6 75 100.0
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 1.2e-12 76.3 50 82.0
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 1.2e-12 76.3 50 82.0
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.2e-12 76.3 50 82.0
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 1.2e-12 76.3 50 82.0
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 1.2e-12 76.3 50 82.0
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 1.2e-12 76.3 50 82.0
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.2e-12 76.3 50 82.0
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 2.0e-12 75.5 50 80.0
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 2.0e-12 75.5 50 80.0
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 3.4e-12 74.7 50 80.0
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 3.4e-12 74.7 50 80.0
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 3.4e-12 74.7 50 80.0
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 7.5e-12 73.6 50 76.0
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.4e-10 69.3 63 60.3
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 4.1e-10 67.8 50 72.0
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 4.1e-10 67.8 50 72.0
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 4.1e-10 67.8 50 72.0
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 4.1e-10 67.8 50 72.0
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 4.1e-10 67.8 50 72.0
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 5.3e-10 67.4 50 70.0
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 5.3e-10 67.4 50 72.0
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 7.0e-10 67.0 50 70.0
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 7.0e-10 67.0 50 72.0
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 7.0e-10 67.0 50 70.0
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 7.0e-10 67.0 50 70.0
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 7.0e-10 67.0 50 72.0
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 7.0e-10 67.0 49 71.4
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 7.0e-10 67.0 50 70.0
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 9.1e-10 66.6 50 70.0
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 9.1e-10 66.6 50 70.0
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.2e-09 66.2 50 70.0
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.2e-09 66.2 50 70.0
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.2e-09 66.2 50 70.0
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 1.2e-09 66.2 50 70.0
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 1.2e-09 66.2 50 70.0
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 1.2e-09 66.2 50 70.0
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 1.2e-09 66.2 50 70.0
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.0e-09 65.5 50 68.0
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 2.0e-09 65.5 50 68.0
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.0e-09 65.5 49 69.4
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 2.7e-09 65.1 50 68.0
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 2.7e-09 65.1 50 68.0
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 2.7e-09 65.1 50 70.0
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 3.5e-09 64.7 50 68.0
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 3.5e-09 64.7 50 68.0
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 3.5e-09 64.7 50 68.0
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 3.5e-09 64.7 50 68.0
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 3.5e-09 64.7 50 68.0
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 4.5e-09 64.3 50 68.0
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 4.5e-09 64.3 50 68.0
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 5.9e-09 63.9 58 60.3
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 5.9e-09 63.9 50 68.0
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 5.9e-09 63.9 50 68.0
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 5.9e-09 63.9 50 66.0
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 5.9e-09 63.9 50 66.0
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 5.9e-09 63.9 50 68.0
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 7.7e-09 63.5 50 66.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.7e-09 63.5 51 66.7
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.7e-09 63.5 51 66.7
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.7e-09 63.5 51 66.7
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 1.0e-08 63.2 50 66.0
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 1.0e-08 63.2 50 66.0
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 1.0e-08 63.2 50 68.0
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.7e-08 62.4 50 62.0
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.7e-08 62.4 50 66.0
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 2.2e-08 62.0 50 66.0
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 2.9e-08 61.6 50 64.0
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 2.9e-08 61.6 50 66.0
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.9e-08 61.6 50 66.0
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 2.9e-08 61.6 50 66.0
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 2.9e-08 61.6 50 66.0
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 2.9e-08 61.6 50 64.0
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 3.8e-08 61.2 50 66.0
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 3.8e-08 61.2 50 66.0
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 5.0e-08 60.8 50 64.0
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 6.5e-08 60.5 50 66.0
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 8.5e-08 60.1 50 62.0
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 8.5e-08 60.1 50 64.0
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 8.5e-08 60.1 50 62.0
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 8.5e-08 60.1 50 62.0
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 8.5e-08 60.1 50 62.0
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 8.5e-08 60.1 50 62.0
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 1.1e-07 59.7 50 64.0
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 1.1e-07 59.7 34 79.4
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 1.1e-07 59.7 50 68.0
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 1.5e-07 59.3 50 60.0
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 1.5e-07 59.3 50 62.0
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.5e-07 59.3 50 64.0
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.9e-07 58.9 50 62.0
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 1.9e-07 58.9 50 62.0
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 1.9e-07 58.9 50 66.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 2.5e-07 58.5 41 68.3
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 2.5e-07 58.5 50 64.0
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 3.2e-07 58.2 50 66.0
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 4.2e-07 57.8 50 62.0
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 4.2e-07 57.8 50 60.0
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 4.2e-07 57.8 50 62.0
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 9.4e-07 56.6 50 62.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 1.2e-06 56.2 56 58.9
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 1.2e-06 56.2 47 66.0
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 1.2e-06 56.2 47 66.0
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 3.6e-06 54.7 50 58.0
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.6e-06 54.7 50 60.0
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 3.6e-06 54.7 47 63.8


User provided reference genes

Program Settings