Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p34030 Brassica napus HOM05D002114 ORTHO05D002155 1.9e-43 178.7 88 100.0
BcaC01g04761 Brassica carinata HOM05D002114 ORTHO05D002155 1.1e-30 136.3 68 100.0
BcaC01g04763 Brassica carinata HOM05D002114 ORTHO05D002155 1.1e-30 136.3 68 100.0
C03p34070 Brassica napus HOM05D002114 ORTHO05D002155 1.1e-30 136.3 68 100.0
BolC3t15714H Brassica oleracea HOM05D002114 ORTHO05D002155 1.1e-30 136.3 68 100.0
BolC3t15717H Brassica oleracea HOM05D002114 ORTHO05D002155 1.1e-30 136.3 68 100.0
A03p28080 Brassica napus HOM05D002114 ORTHO05D002155 3.2e-30 134.8 76 88.2
BraA03t12023Z Brassica rapa HOM05D002114 ORTHO05D002155 3.2e-30 134.8 76 88.2
A03p28160 Brassica napus HOM05D002114 ORTHO05D002155 1.6e-29 132.5 76 88.2
BraA03t12021Z Brassica rapa HOM05D002114 ORTHO05D002155 1.6e-29 132.5 76 88.2
BcaB01g02856 Brassica carinata HOM05D002114 ORTHO05D002155 4.6e-29 131.0 68 95.6
BcaC01g04764 Brassica carinata HOM05D002114 ORTHO05D002155 1.6e-26 122.5 68 88.2
BcaC01g04767 Brassica carinata HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
BcaC01g04768 Brassica carinata HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
BcaC01g04769 Brassica carinata HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
BcaC01g04770 Brassica carinata HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
C03p33960 Brassica napus HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
C03p34000 Brassica napus HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
BolC3t15707H Brassica oleracea HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
BolC3t15708H Brassica oleracea HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
BolC3t15712H Brassica oleracea HOM05D002114 ORTHO05D002155 2.4e-25 118.6 68 86.8
A03p28090 Brassica napus HOM05D002114 ORTHO05D002155 3.1e-25 118.2 68 85.3
BraA03t12024Z Brassica rapa HOM05D002114 ORTHO05D002155 3.1e-25 118.2 68 85.3
Thhalv10028540m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 1.0e-20 103.2 69 79.7
Sp6g09350 Schrenkiella parvula HOM05D002114 ORTHO05D002155 8.7e-20 100.1 69 75.4
Thhalv10003900m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 1.1e-17 93.2 68 67.6
AL1G51130 Arabidopsis lyrata HOM05D002114 ORTHO05D002155 1.8e-17 92.4 62 71.0
Sp1g31190 Schrenkiella parvula HOM05D002114 ORTHO05D002155 3.4e-16 88.2 69 63.8
THA.LOC104806809 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 3.4e-16 88.2 64 65.6
CARHR034770 Cardamine hirsuta HOM05D002114 ORTHO05D002155 4.5e-16 87.8 62 69.4
THA.LOC104813131 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 2.2e-15 85.5 67 61.2
BcaB07g33990 Brassica carinata HOM05D002114 ORTHO05D002155 3.8e-15 84.7 64 62.5
BcaC08g43755 Brassica carinata HOM05D002114 ORTHO05D002155 5.0e-15 84.3 64 64.1
C06p11320 Brassica napus HOM05D002114 ORTHO05D002155 5.0e-15 84.3 64 64.1
BolC6t36266H Brassica oleracea HOM05D002114 ORTHO05D002155 5.0e-15 84.3 64 64.1
THA.LOC104817001 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 5.0e-15 84.3 68 63.2
BcaB07g33077 Brassica carinata HOM05D002114 ORTHO05D002155 2.5e-14 82.0 64 60.9
BcaC01g04766 Brassica carinata HOM05D002114 ORTHO05D002155 5.5e-14 80.9 45 86.7
BcaB01g02858 Brassica carinata HOM05D002114 ORTHO05D002155 2.7e-13 78.6 41 90.2
CARHR259540 Cardamine hirsuta HOM05D002114 ORTHO05D002155 2.7e-13 78.6 66 66.7
AT1G36990 Arabidopsis thaliana HOM05D002114 ORTHO05D002155 2.0e-11 72.4 62 59.7
Aa31LG6G9080 Aethionema arabicum HOM05D002114 ORTHO05D002155 1.8e-09 65.9 60 55.0
PGSC0003DMG400030206 Solanum tuberosum HOM05D002114 ORTHO05D002155 5.3e-09 64.3 43 67.4
Actinidia23040 Actinidia chinensis HOM05D002114 ORTHO05D002155 2.0e-08 62.4 50 56.0
Duzib116G0235 Durio zibethinus HOM05D002114 ORTHO05D002155 3.4e-08 61.6 43 62.8
Nitab4.5_0000051g0060 Nicotiana tabacum HOM05D002114 ORTHO05D002155 3.4e-08 61.6 43 65.1
Nitab4.5_0002332g0040 Nicotiana tabacum HOM05D002114 ORTHO05D002155 3.4e-08 61.6 43 65.1
CiPaw.05G228500 Carya illinoinensis HOM05D002114 ORTHO05D002155 4.5e-08 61.2 46 63.0
Peaxi162Scf00476g00627 Petunia axillaris HOM05D002114 ORTHO05D002155 4.5e-08 61.2 43 65.1
Carub.0006s2705 Capsella rubella HOM05D002114 ORTHO05D002155 5.9e-08 60.8 54 59.3
Carub.0145s0001 Capsella rubella HOM05D002114 ORTHO05D002155 5.9e-08 60.8 54 59.3
COL.COLO4_32807 Corchorus olitorius HOM05D002114 ORTHO05D002155 1.0e-07 60.1 43 60.5
Duzib041G0185 Durio zibethinus HOM05D002114 ORTHO05D002155 1.0e-07 60.1 43 62.8
Thecc.08G117100 Theobroma cacao HOM05D002114 ORTHO05D002155 1.0e-07 60.1 43 60.5
Gohir.A05G268400 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.3e-07 59.7 43 60.5
Gohir.D05G270000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.3e-07 59.7 43 60.5
Gorai.009G282700 Gossypium raimondii HOM05D002114 ORTHO05D002155 1.3e-07 59.7 43 60.5
Medtr5g060420 Medicago truncatula HOM05D002114 ORTHO05D002155 1.3e-07 59.7 49 55.1
TPR.G30411 Trifolium pratense HOM05D002114 ORTHO05D002155 1.3e-07 59.7 49 55.1
PGR042G3890 Punica granatum HOM05D002114 ORTHO05D002155 1.7e-07 59.3 42 66.7
Ca_26445_v3 Cicer arietinum L. HOM05D002114 ORTHO05D002155 2.2e-07 58.9 45 57.8
ClCG11G015500 Citrullus lanatus HOM05D002114 ORTHO05D002155 2.2e-07 58.9 42 64.3
MELO3C010439.2 Cucumis melo HOM05D002114 ORTHO05D002155 2.2e-07 58.9 42 64.3
CsaV3_4G028580 Cucumis sativus L. HOM05D002114 ORTHO05D002155 2.2e-07 58.9 42 64.3
Nn1g08551 Nelumbo nucifera HOM05D002114 ORTHO05D002155 2.2e-07 58.9 42 64.3
CAN.G935.3 Capsicum annuum HOM05D002114 ORTHO05D002155 2.9e-07 58.5 52 55.8
COL.COLO4_17899 Corchorus olitorius HOM05D002114 ORTHO05D002155 2.9e-07 58.5 42 61.9
Lj1g0012616 Lotus japonicus HOM05D002114 ORTHO05D002155 2.9e-07 58.5 46 58.7
Phvul.008G168200 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 2.9e-07 58.5 46 58.7
Sed0005417 Sechium edule HOM05D002114 ORTHO05D002155 2.9e-07 58.5 53 58.5
Thecc.02G041700 Theobroma cacao HOM05D002114 ORTHO05D002155 2.9e-07 58.5 42 61.9
vmacro00796 Vaccinium macrocarpon HOM05D002114 ORTHO05D002155 2.9e-07 58.5 46 56.5
Dinv26715 Davidia involucrata HOM05D002114 ORTHO05D002155 3.8e-07 58.2 46 60.9
Gohir.A01G176400 Gossypium hirsutum HOM05D002114 ORTHO05D002155 3.8e-07 58.2 52 55.8
Phvul.008G168300 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 3.8e-07 58.2 49 53.1
Psat0s411g0160 Pisum sativum HOM05D002114 ORTHO05D002155 3.8e-07 58.2 49 53.1
SalBow7G2503 Salvia bowleyana HOM05D002114 ORTHO05D002155 3.8e-07 58.2 43 60.5
SGA_v2.0_scaffold28G12028 Striga asiatica HOM05D002114 ORTHO05D002155 3.8e-07 58.2 43 60.5
AT4G08510 Arabidopsis thaliana HOM05D002114 ORTHO05D002155 5.0e-07 57.8 56 58.9
Cfa015960 Carpinus fangiana HOM05D002114 ORTHO05D002155 5.0e-07 57.8 55 52.7
Migut.N03319 Erythranthe guttata HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 60.5
FvH4_5g38960 Fragaria vesca HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 58.1
FAN04G2397 Fragaria x ananassa HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 58.1
FAN08G3544 Fragaria x ananassa HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 58.1
FAN13G1068 Fragaria x ananassa HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 58.1
FAN18G0458 Fragaria x ananassa HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 58.1
Gohir.A06G041100 Gossypium hirsutum HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 55.8
Gohir.D06G042000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 55.8
Gorai.010G047200 Gossypium raimondii HOM05D002114 ORTHO05D002155 5.0e-07 57.8 43 55.8
Glyma.14G166100 Glycine max HOM05D002114 ORTHO05D002155 6.5e-07 57.4 45 57.8
Gorai.002G220500 Gossypium raimondii HOM05D002114 ORTHO05D002155 6.5e-07 57.4 55 50.9
Sabra05G0129600 Salix brachista HOM05D002114 ORTHO05D002155 6.5e-07 57.4 42 61.9
Actinidia03497 Actinidia chinensis HOM05D002114 ORTHO05D002155 8.5e-07 57.0 43 58.1
AL6G42320 Arabidopsis lyrata HOM05D002114 ORTHO05D002155 8.5e-07 57.0 56 58.9
DCAR_014283 Daucus carota HOM05D002114 ORTHO05D002155 8.5e-07 57.0 43 58.1
Gohir.D01G181801 Gossypium hirsutum HOM05D002114 ORTHO05D002155 8.5e-07 57.0 55 50.9
Gohir.D02G082000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 8.5e-07 57.0 43 55.8
Gorai.005G091900 Gossypium raimondii HOM05D002114 ORTHO05D002155 8.5e-07 57.0 43 55.8
Sopen11g008720 Solanum pennellii HOM05D002114 ORTHO05D002155 8.5e-07 57.0 42 61.9
TAR628G1433 Trochodendron aralioides HOM05D002114 ORTHO05D002155 8.5e-07 57.0 43 60.5
VMungo0647G0374 Vigna mungo HOM05D002114 ORTHO05D002155 8.5e-07 57.0 46 56.5
GSVIVG01008941001 Vitis vinifera HOM05D002114 ORTHO05D002155 8.5e-07 57.0 43 58.1
CSS0028412 Camellia sinensis var. sinensis HOM05D002114 ORTHO05D002155 1.1e-06 56.6 43 55.8
Gohir.D01G167200 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.1e-06 56.6 52 53.8
MD08G1173100 Malus domestica HOM05D002114 ORTHO05D002155 1.1e-06 56.6 43 58.1
Rhsim11G0065200 Rhododendron simsii HOM05D002114 ORTHO05D002155 1.1e-06 56.6 46 54.3
RcHm_v2.0_Chr7g0240931 Rosa chinensis HOM05D002114 ORTHO05D002155 1.1e-06 56.6 43 58.1
Cc00_g07850 Coffea canephora HOM05D002114 ORTHO05D002155 1.4e-06 56.2 43 62.8
Haze_00522 Corylus avellana HOM05D002114 ORTHO05D002155 1.4e-06 56.2 42 59.5
Duzib248G0335 Durio zibethinus HOM05D002114 ORTHO05D002155 1.4e-06 56.2 42 59.5
Gohir.A02G074900 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.4e-06 56.2 43 55.8
MD15G1358400 Malus domestica HOM05D002114 ORTHO05D002155 1.4e-06 56.2 43 58.1
Rhsim11G0065100 Rhododendron simsii HOM05D002114 ORTHO05D002155 1.4e-06 56.2 46 58.7
CiPaw.06G025100 Carya illinoinensis HOM05D002114 ORTHO05D002155 1.9e-06 55.8 63 49.2
ClCG03G009150 Citrullus lanatus HOM05D002114 ORTHO05D002155 1.9e-06 55.8 42 61.9
Migut.C01189 Erythranthe guttata HOM05D002114 ORTHO05D002155 1.9e-06 55.8 42 59.5
Glyma.13G084300 Glycine max HOM05D002114 ORTHO05D002155 1.9e-06 55.8 45 55.6
Hma1.2p1_0221F.1_g093190 Hydrangea macrophylla HOM05D002114 ORTHO05D002155 1.9e-06 55.8 45 62.2
Lalb_Chr17g0344001 Lupinus albus HOM05D002114 ORTHO05D002155 1.9e-06 55.8 53 50.9
Lalb_Chr17g0344021 Lupinus albus HOM05D002114 ORTHO05D002155 1.9e-06 55.8 53 50.9
Sed0025403 Sechium edule HOM05D002114 ORTHO05D002155 1.9e-06 55.8 40 62.5
Solyc11g013760.2 Solanum lycopersicum HOM05D002114 ORTHO05D002155 1.9e-06 55.8 42 59.5
Atru.chr13.1319 Acer truncatum HOM05D002114 ORTHO05D002155 2.5e-06 55.5 41 61.0
Atru.chr13.1363 Acer truncatum HOM05D002114 ORTHO05D002155 2.5e-06 55.5 41 61.0
MSTRG.1485 Avicennia marina HOM05D002114 ORTHO05D002155 2.5e-06 55.5 43 58.1
Lalb_Chr04g0253291 Lupinus albus HOM05D002114 ORTHO05D002155 2.5e-06 55.5 53 50.9
Actinidia29430 Actinidia chinensis HOM05D002114 ORTHO05D002155 3.2e-06 55.1 43 58.1
CiPaw.05G042400 Carya illinoinensis HOM05D002114 ORTHO05D002155 3.2e-06 55.1 42 59.5
Duzib093G1968 Durio zibethinus HOM05D002114 ORTHO05D002155 3.2e-06 55.1 43 62.8
arahy.Tifrunner.gnm1.ann1.6TI2WT Arachis hypogaea HOM05D002114 ORTHO05D002155 4.2e-06 54.7 40 60.0
arahy.Tifrunner.gnm1.ann1.KNS6CZ Arachis hypogaea HOM05D002114 ORTHO05D002155 4.2e-06 54.7 40 60.0
QL12p035256 Quercus lobata HOM05D002114 ORTHO05D002155 4.2e-06 54.7 62 46.8
TAR376G0284 Trochodendron aralioides HOM05D002114 ORTHO05D002155 4.2e-06 54.7 43 55.8
VMungo0647G0978 Vigna mungo HOM05D002114 ORTHO05D002155 4.2e-06 54.7 46 54.3
Manes.10G132700 Manihot esculenta HOM05D002114 ORTHO05D002155 5.5e-06 54.3 45 60.0
SGA_v2.0_scaffold24G10503 Striga asiatica HOM05D002114 ORTHO05D002155 5.5e-06 54.3 42 59.5
arahy.Tifrunner.gnm1.ann1.506V44 Arachis hypogaea HOM05D002114 ORTHO05D002155 7.2e-06 53.9 39 61.5
arahy.Tifrunner.gnm1.ann1.J4263J Arachis hypogaea HOM05D002114 ORTHO05D002155 7.2e-06 53.9 39 61.5
MELO3C022782.2 Cucumis melo HOM05D002114 ORTHO05D002155 7.2e-06 53.9 42 59.5
Lalb_Chr17g0343991 Lupinus albus HOM05D002114 ORTHO05D002155 7.2e-06 53.9 72 45.8
Manes.02G158800 Manihot esculenta HOM05D002114 ORTHO05D002155 7.2e-06 53.9 41 61.0
GSVIVG01029687001 Vitis vinifera HOM05D002114 ORTHO05D002155 7.2e-06 53.9 53 56.6
CsaV3_5G023480 Cucumis sativus L. HOM05D002114 ORTHO05D002155 9.4e-06 53.5 42 59.5
DCAR_001815 Daucus carota HOM05D002114 ORTHO05D002155 9.4e-06 53.5 48 56.2
Gorai.002G207700 Gossypium raimondii HOM05D002114 ORTHO05D002155 9.4e-06 53.5 42 54.8
Prupe.1G505900 Prunus persica HOM05D002114 ORTHO05D002155 9.4e-06 53.5 43 58.1
Sed0018069 Sechium edule HOM05D002114 ORTHO05D002155 9.4e-06 53.5 44 63.6


User provided reference genes

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