Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p33850 Brassica napus HOM05D000271 ORTHO05D002798 2.7e-33 144.8 76 100.0
A03p07860 Brassica napus HOM05D000271 ORTHO05D002798 5.0e-32 140.6 74 98.6
A10p01330 Brassica napus HOM05D000271 ORTHO05D002798 5.0e-32 140.6 74 98.6
C03p49440 Brassica napus HOM05D000271 ORTHO05D002798 5.0e-32 140.6 74 98.6
C02p46770 Brassica napus HOM05D000271 ORTHO05D002798 2.1e-30 135.2 74 94.6
C09p26710 Brassica napus HOM05D000271 ORTHO05D002798 2.1e-30 135.2 74 94.6
BcaB02g09809 Brassica carinata HOM05D000271 ORTHO05D002798 1.6e-14 82.4 45 95.6
BcaC01g02696 Brassica carinata HOM05D000271 ORTHO05D002798 8.9e-13 76.6 45 91.1
A06p31450 Brassica napus HOM05D000271 ORTHO05D002798 8.9e-13 76.6 45 91.1
C03p61530 Brassica napus HOM05D000271 ORTHO05D002798 8.9e-13 76.6 45 91.1
BraA06t26081Z Brassica rapa HOM05D000271 ORTHO05D002798 8.9e-13 76.6 45 91.1
BolC3t18413H Brassica oleracea HOM05D000271 ORTHO05D002798 2.6e-12 75.1 45 88.9
Sp2g27720 Schrenkiella parvula HOM05D000271 ORTHO05D002798 1.3e-11 72.8 45 82.2
AT5G64660 Arabidopsis thaliana HOM05D000271 ORTHO05D002798 6.4e-11 70.5 45 77.8
Thhalv10004299m.g Eutrema salsugineum HOM05D000271 ORTHO05D002798 6.4e-11 70.5 45 77.8
THA.LOC104818463 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 8.4e-11 70.1 45 75.6
AL8G42070 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 1.4e-10 69.3 45 75.6
Aa31LG1G17290 Aethionema arabicum HOM05D000271 ORTHO05D002798 9.2e-10 66.6 45 71.1
THA.LOC104799472 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 1.6e-09 65.9 45 68.9
CARHR278630 Cardamine hirsuta HOM05D000271 ORTHO05D002798 2.1e-09 65.5 45 73.3
BcaC04g23301 Brassica carinata HOM05D000271 ORTHO05D002798 6.0e-09 63.9 45 75.6
C09p09940 Brassica napus HOM05D000271 ORTHO05D002798 6.0e-09 63.9 45 75.6
BolC9t53901H Brassica oleracea HOM05D000271 ORTHO05D002798 6.0e-09 63.9 45 75.6
AL6G20200 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 1.3e-08 62.8 45 73.3
Thecc.01G124800 Theobroma cacao HOM05D000271 ORTHO05D002798 2.3e-08 62.0 61 52.5
Duzib187G1115 Durio zibethinus HOM05D000271 ORTHO05D002798 3.0e-08 61.6 45 64.4
COL.COLO4_14001 Corchorus olitorius HOM05D000271 ORTHO05D002798 6.6e-08 60.5 52 57.7
Cpa.g.sc42.110 Carica papaya HOM05D000271 ORTHO05D002798 8.7e-08 60.1 45 64.4
THA.LOC104820423 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 1.5e-07 59.3 45 64.4
Manes.12G152200 Manihot esculenta HOM05D000271 ORTHO05D002798 1.9e-07 58.9 45 66.7
Duzib147G0687 Durio zibethinus HOM05D000271 ORTHO05D002798 2.5e-07 58.5 45 60.0
Ciclev10025637m.g Citrus clementina HOM05D000271 ORTHO05D002798 5.6e-07 57.4 45 64.4
THA.LOC104821858 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 5.6e-07 57.4 45 66.7
Gohir.A01G128175 Gossypium hirsutum HOM05D000271 ORTHO05D002798 7.3e-07 57.0 52 53.8
Gohir.A11G225800 Gossypium hirsutum HOM05D000271 ORTHO05D002798 7.3e-07 57.0 52 53.8
VMungo0251G2475 Vigna mungo HOM05D000271 ORTHO05D002798 9.6e-07 56.6 45 64.4
Carub.0006s0821 Capsella rubella HOM05D000271 ORTHO05D002798 1.2e-06 56.2 43 67.4
FAN19G1521 Fragaria x ananassa HOM05D000271 ORTHO05D002798 1.2e-06 56.2 43 65.1
Phvul.002G270300 Phaseolus vulgaris HOM05D000271 ORTHO05D002798 1.2e-06 56.2 45 62.2
CsaV3_6G041810 Cucumis sativus L. HOM05D000271 ORTHO05D002798 1.6e-06 55.8 45 57.8
FvH4_1g24000 Fragaria vesca HOM05D000271 ORTHO05D002798 1.6e-06 55.8 43 65.1
FAN23G0093 Fragaria x ananassa HOM05D000271 ORTHO05D002798 1.6e-06 55.8 43 65.1
FAN26G2567 Fragaria x ananassa HOM05D000271 ORTHO05D002798 1.6e-06 55.8 43 65.1
Gohir.D11G234400 Gossypium hirsutum HOM05D000271 ORTHO05D002798 1.6e-06 55.8 52 51.9
Gorai.007G246700 Gossypium raimondii HOM05D000271 ORTHO05D002798 1.6e-06 55.8 52 51.9
Sed0008178 Sechium edule HOM05D000271 ORTHO05D002798 2.1e-06 55.5 45 57.8
Lj4g0017524 Lotus japonicus HOM05D000271 ORTHO05D002798 2.8e-06 55.1 45 57.8
MELO3C008040.2 Cucumis melo HOM05D000271 ORTHO05D002798 4.7e-06 54.3 45 53.3
RcHm_v2.0_Chr2g0120131 Rosa chinensis HOM05D000271 ORTHO05D002798 4.7e-06 54.3 43 60.5
TPR.G37415 Trifolium pratense HOM05D000271 ORTHO05D002798 4.7e-06 54.3 45 57.8
VMungo1309G2205 Vigna mungo HOM05D000271 ORTHO05D002798 4.7e-06 54.3 45 53.3
ClCG01G015580 Citrullus lanatus HOM05D000271 ORTHO05D002798 6.2e-06 53.9 45 55.6
Gohir.A11G055900 Gossypium hirsutum HOM05D000271 ORTHO05D002798 6.2e-06 53.9 45 55.6
Gohir.D11G060000 Gossypium hirsutum HOM05D000271 ORTHO05D002798 6.2e-06 53.9 45 55.6
Gorai.007G064700 Gossypium raimondii HOM05D000271 ORTHO05D002798 6.2e-06 53.9 45 55.6
Phvul.009G148200 Phaseolus vulgaris HOM05D000271 ORTHO05D002798 6.2e-06 53.9 45 53.3
CANSAT01G0085 Cannabis sativa HOM05D000271 ORTHO05D002798 8.1e-06 53.5 45 57.8
Ca_17651_v3 Cicer arietinum L. HOM05D000271 ORTHO05D002798 8.1e-06 53.5 45 57.8
Glyma.08G147200 Glycine max HOM05D000271 ORTHO05D002798 8.1e-06 53.5 45 55.6
TWI79G1625 Tripterygium wilfordii HOM05D000271 ORTHO05D002798 8.1e-06 53.5 45 60.0


User provided reference genes

Program Settings