Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p33400 Brassica napus HOM05D005145 ORTHO05D006062 3.4e-52 208.0 102 100.0
BolC3t15662H Brassica oleracea HOM05D005145 ORTHO05D006062 3.4e-52 208.0 102 100.0
A09p45140 Brassica napus HOM05D005145 ORTHO05D006062 1.9e-42 175.6 129 73.6
BraA09t39975Z Brassica rapa HOM05D005145 ORTHO05D006062 1.9e-42 175.6 129 73.6
BcaB01g00448 Brassica carinata HOM05D005145 ORTHO05D006062 2.1e-41 172.2 140 69.3
BcaNung06088 Brassica carinata HOM05D005145 ORTHO05D006062 2.1e-41 172.2 140 69.3
C07p46760 Brassica napus HOM05D005145 ORTHO05D006062 2.7e-41 171.8 129 71.3
C08p27330 Brassica napus HOM05D005145 ORTHO05D006062 1.0e-40 169.9 146 66.4
BcaC06g33022 Brassica carinata HOM05D005145 ORTHO05D006062 1.4e-40 169.5 140 67.9
Aa31LG10G7130 Aethionema arabicum HOM05D005145 ORTHO05D006062 6.7e-40 167.2 129 69.8
Sp5g10230 Schrenkiella parvula HOM05D005145 ORTHO05D006062 6.7e-40 167.2 140 67.1
BolC8t50350H Brassica oleracea HOM05D005145 ORTHO05D006062 8.8e-40 166.8 150 64.0
BcaC06g33379 Brassica carinata HOM05D005145 ORTHO05D006062 1.2e-39 166.4 140 66.4
BolC7t45194H Brassica oleracea HOM05D005145 ORTHO05D006062 2.0e-39 165.6 147 63.9
ECA248G1413 Erigeron canadensis HOM05D005145 ORTHO05D006062 2.0e-39 165.6 140 63.6
Thhalv10010511m.g Eutrema salsugineum HOM05D005145 ORTHO05D006062 2.6e-39 165.2 140 67.1
A03p48650 Brassica napus HOM05D005145 ORTHO05D006062 3.3e-39 164.9 133 68.4
HanXRQChr10g0304331 Helianthus annuus HOM05D005145 ORTHO05D006062 4.4e-39 164.5 140 62.9
Carub.0003s2169 Capsella rubella HOM05D005145 ORTHO05D006062 7.5e-39 163.7 140 65.0
Gohir.A07G061000 Gossypium hirsutum HOM05D005145 ORTHO05D006062 7.5e-39 163.7 140 64.3
Gorai.001G069200 Gossypium raimondii HOM05D005145 ORTHO05D006062 7.5e-39 163.7 140 64.3
Cpa.g.sc125.17 Carica papaya HOM05D005145 ORTHO05D006062 9.7e-39 163.3 140 63.6
TWI09G1580 Tripterygium wilfordii HOM05D005145 ORTHO05D006062 9.7e-39 163.3 140 65.0
CARHR161760 Cardamine hirsuta HOM05D005145 ORTHO05D006062 1.7e-38 162.5 140 65.7
DCAR_029683 Daucus carota HOM05D005145 ORTHO05D006062 2.2e-38 162.2 140 62.9
Lj7C573G7 Lonicera japonica HOM05D005145 ORTHO05D006062 2.2e-38 162.2 138 65.9
Gohir.D07G065700 Gossypium hirsutum HOM05D005145 ORTHO05D006062 3.7e-38 161.4 140 63.6
QL04p008103 Quercus lobata HOM05D005145 ORTHO05D006062 3.7e-38 161.4 140 62.9
QL04p008544 Quercus lobata HOM05D005145 ORTHO05D006062 3.7e-38 161.4 140 62.9
AT3G21640 Arabidopsis thaliana HOM05D005145 ORTHO05D006062 4.8e-38 161.0 140 63.6
Dinv43426 Davidia involucrata HOM05D005145 ORTHO05D006062 4.8e-38 161.0 140 63.6
AL3G35760 Arabidopsis lyrata HOM05D005145 ORTHO05D006062 6.3e-38 160.6 140 63.6
Thecc.01G408700 Theobroma cacao HOM05D005145 ORTHO05D006062 6.3e-38 160.6 139 64.0
Eucgr.G03367 Eucalyptus grandis HOM05D005145 ORTHO05D006062 8.2e-38 160.2 140 62.9
Lsat_1_v5_gn_1_105761 Lactuca sativa HOM05D005145 ORTHO05D006062 8.2e-38 160.2 140 62.1
Potri.009G059200 Populus trichocarpa HOM05D005145 ORTHO05D006062 8.2e-38 160.2 140 61.4
unitig_749.g14327 Utricularia gibba HOM05D005145 ORTHO05D006062 8.2e-38 160.2 140 62.9
COL.COLO4_04870 Corchorus olitorius HOM05D005145 ORTHO05D006062 1.1e-37 159.8 140 62.9
Dinv10758 Davidia involucrata HOM05D005145 ORTHO05D006062 1.1e-37 159.8 129 66.7
Oeu014585.1 Olea europaea HOM05D005145 ORTHO05D006062 1.1e-37 159.8 140 62.1
Sabra16G0162500 Salix brachista HOM05D005145 ORTHO05D006062 1.1e-37 159.8 140 60.7
BraA03t13968Z Brassica rapa HOM05D005145 ORTHO05D006062 1.4e-37 159.5 163 58.3
Potri.001G264400 Populus trichocarpa HOM05D005145 ORTHO05D006062 1.4e-37 159.5 140 60.7
Duzib138G1043 Durio zibethinus HOM05D005145 ORTHO05D006062 1.8e-37 159.1 139 63.3
Sabra09G0043600 Salix brachista HOM05D005145 ORTHO05D006062 2.4e-37 158.7 140 61.4
MD02G1308400 Malus domestica HOM05D005145 ORTHO05D006062 3.1e-37 158.3 140 62.9
SalBow1G5123 Salvia bowleyana HOM05D005145 ORTHO05D006062 3.1e-37 158.3 140 62.1
THA.LOC104801977 Tarenaya hassleriana HOM05D005145 ORTHO05D006062 3.1e-37 158.3 140 60.7
Actinidia19403 Actinidia chinensis HOM05D005145 ORTHO05D006062 4.1e-37 157.9 140 62.1
MSTRG.17025 Avicennia marina HOM05D005145 ORTHO05D006062 5.3e-37 157.5 140 61.4
CiPaw.14G001300 Carya illinoinensis HOM05D005145 ORTHO05D006062 5.3e-37 157.5 140 61.4
Dinv01450 Davidia involucrata HOM05D007544 ORTHO05D006062 5.3e-37 157.5 140 62.1
FAN01G2312 Fragaria x ananassa HOM05D005145 ORTHO05D006062 5.3e-37 157.5 140 63.6
FAN03G2501 Fragaria x ananassa HOM05D005145 ORTHO05D006062 5.3e-37 157.5 140 63.6
RcHm_v2.0_Chr1g0317011 Rosa chinensis HOM05D005145 ORTHO05D006062 5.3e-37 157.5 140 63.6
GSVIVG01032135001 Vitis vinifera HOM05D005145 ORTHO05D006062 5.3e-37 157.5 140 62.1
CSS0031676 Camellia sinensis var. sinensis HOM05D005145 ORTHO05D006062 9.1e-37 156.8 139 62.6
Dinv09339 Davidia involucrata HOM05D005145 ORTHO05D006062 9.1e-37 156.8 140 62.9
CsaV3_3G032060 Cucumis sativus L. HOM05D005145 ORTHO05D006062 1.2e-36 156.4 140 62.1
FvH4_7g01260 Fragaria vesca HOM05D005145 ORTHO05D006062 1.2e-36 156.4 140 62.9
CiPaw.13G006700 Carya illinoinensis HOM05D005145 ORTHO05D006062 2.0e-36 155.6 140 60.7
FAN10G0323 Fragaria x ananassa HOM05D005145 ORTHO05D006062 2.0e-36 155.6 140 62.9
PGR083G1973 Punica granatum HOM05D005145 ORTHO05D006062 2.0e-36 155.6 140 62.9
Ciclev10031893m.g Citrus clementina HOM05D005145 ORTHO05D006062 2.7e-36 155.2 138 61.6
Manes.07G007200 Manihot esculenta HOM05D005145 ORTHO05D006062 2.7e-36 155.2 140 60.0
Actinidia31072 Actinidia chinensis HOM05D000961 ORTHO05D000841 3.5e-36 154.8 140 62.1
Atru.chr11.2602 Acer truncatum HOM05D005145 ORTHO05D006062 4.5e-36 154.5 140 60.7
Cc02_g28150 Coffea canephora HOM05D005145 ORTHO05D006062 4.5e-36 154.5 140 61.4
Prupe.2G017100 Prunus persica HOM05D005145 ORTHO05D006062 4.5e-36 154.5 140 61.4
TAR636G0099 Trochodendron aralioides HOM05D005145 ORTHO05D006062 4.5e-36 154.5 140 60.7
AUR62009396 Chenopodium quinoa HOM05D005145 ORTHO05D006062 5.9e-36 154.1 140 59.3
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 7.7e-36 153.7 140 61.4
Sopen01g034400 Solanum pennellii HOM05D005145 ORTHO05D006062 7.7e-36 153.7 140 60.7
PSO478G3750 Papaver somniferum HOM05D005145 ORTHO05D006062 1.0e-35 153.3 140 59.3
PSO782G5523 Papaver somniferum HOM05D005145 ORTHO05D006062 1.0e-35 153.3 140 59.3
SGA_v2.0_scaffold4G02519 Striga asiatica HOM05D005145 ORTHO05D006062 1.0e-35 153.3 140 60.0
ClCG10G012290 Citrullus lanatus HOM05D005145 ORTHO05D006062 1.3e-35 152.9 140 60.0
Sed0001165 Sechium edule HOM05D005145 ORTHO05D006062 1.3e-35 152.9 140 60.0
Sc11g0009070 Simmondsia chinensis HOM05D005145 ORTHO05D006062 1.3e-35 152.9 139 60.4
Nn7g36253 Nelumbo nucifera HOM05D005145 ORTHO05D006062 1.7e-35 152.5 140 58.6
PGSC0003DMG400006860 Solanum tuberosum HOM05D005145 ORTHO05D006062 2.2e-35 152.1 140 59.3
CANSAT35G1224 Cannabis sativa HOM05D005145 ORTHO05D006062 2.9e-35 151.8 140 59.3
Zm00001eb092870 Zea mays HOM05D005145 ORTHO05D006062 2.9e-35 151.8 140 58.6
Nitab4.5_0000707g0300 Nicotiana tabacum HOM05D005145 ORTHO05D006062 3.8e-35 151.4 140 59.3
Nitab4.5_0002918g0060 Nicotiana tabacum HOM05D005145 ORTHO05D006062 3.8e-35 151.4 140 59.3
Sc23g0005930 Simmondsia chinensis HOM05D005145 ORTHO05D006062 3.8e-35 151.4 139 60.4
Ah.13g067830 Amaranthus hybridus HOM05D005145 ORTHO05D006062 5.0e-35 151.0 140 59.3
CAN.G219.41 Capsicum annuum HOM05D005145 ORTHO05D006062 5.0e-35 151.0 140 59.3
Sed0004407 Sechium edule HOM05D005145 ORTHO05D006062 5.0e-35 151.0 140 60.0
Lj3g0020185 Lotus japonicus HOM05D005145 ORTHO05D006062 8.5e-35 150.2 140 59.3
Hund05940 Selenicereus undatus HOM05D005145 ORTHO05D006062 8.5e-35 150.2 140 58.6
EL10Ac2g04343 Beta vulgaris HOM05D005145 ORTHO05D006062 1.1e-34 149.8 140 57.1
vmacro13679 Vaccinium macrocarpon HOM05D005145 ORTHO05D006062 1.1e-34 149.8 140 59.3
Lalb_Chr01g0000411 Lupinus albus HOM05D005145 ORTHO05D006062 1.5e-34 149.4 140 57.9
arahy.Tifrunner.gnm1.ann1.HLL15Q Arachis hypogaea HOM05D005145 ORTHO05D006062 1.9e-34 149.1 140 58.6
arahy.Tifrunner.gnm1.ann1.TWX3XF Arachis hypogaea HOM05D005145 ORTHO05D006062 1.9e-34 149.1 140 58.6
Cfa010794 Carpinus fangiana HOM05D005145 ORTHO05D006062 1.9e-34 149.1 140 58.6
AUR62023079 Chenopodium quinoa HOM05D005145 ORTHO05D006062 1.9e-34 149.1 140 57.9
Peaxi162Scf00744g00356 Petunia axillaris HOM05D005145 ORTHO05D006062 1.9e-34 149.1 140 58.6
HPP92_009711 Vanilla planifolia HOM05D005145 ORTHO05D006062 1.9e-34 149.1 140 58.6
CDE05G1020 Ceratophyllum demersum HOM05D005145 ORTHO05D006062 2.5e-34 148.7 140 57.9
Migut.B01287 Erythranthe guttata HOM05D005145 ORTHO05D006062 2.5e-34 148.7 140 60.0
Os11g0148300 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 2.5e-34 148.7 140 57.1
Aqoxy2G00161 Aquilegia oxysepala HOM05D005145 ORTHO05D006062 3.2e-34 148.3 140 60.0
Glyma.09G228200 Glycine max HOM05D005145 ORTHO05D006062 3.2e-34 148.3 140 57.1
Glyma.12G008300 Glycine max HOM05D005145 ORTHO05D006062 3.2e-34 148.3 140 57.9
MBI15_g03642_MAGBIO Magnolia biondii HOM05D005145 ORTHO05D006062 3.2e-34 148.3 140 57.1
VMungo1127G0627 Vigna mungo HOM05D005145 ORTHO05D006062 3.2e-34 148.3 140 57.9
Os12g0145500 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 5.5e-34 147.5 140 57.1
Haze_03177 Corylus avellana HOM05D005145 ORTHO05D006062 7.2e-34 147.1 140 57.9
Rhsim07G0056700 Rhododendron simsii HOM05D000961 ORTHO05D000841 9.4e-34 146.7 140 60.0
ATR0332G093 Amborella trichopoda HOM05D005145 ORTHO05D006062 1.2e-33 146.4 139 56.1
Ca_19569_v3 Cicer arietinum L. HOM05D005145 ORTHO05D006062 2.1e-33 145.6 140 57.9
Phvul.011G012900 Phaseolus vulgaris HOM05D005145 ORTHO05D006062 2.1e-33 145.6 140 56.4
Medtr4g039430 Medicago truncatula HOM05D005145 ORTHO05D006062 2.7e-33 145.2 140 57.9
TPR.G30176 Trifolium pratense HOM05D005145 ORTHO05D006062 2.7e-33 145.2 140 57.9
Psat7g183320 Pisum sativum HOM05D005145 ORTHO05D006062 3.6e-33 144.8 140 57.1
Duzib268G1834 Durio zibethinus HOM05D005145 ORTHO05D006062 6.1e-33 144.1 140 58.6
FAN06G2757 Fragaria x ananassa HOM05D005145 ORTHO05D006062 6.1e-33 144.1 161 54.7
SEGI_24644 Sequoiadendron giganteum HOM05D005145 ORTHO05D006062 1.2e-31 139.8 140 53.6
Solyc01g087470.3 Solanum lycopersicum HOM05D005145 ORTHO05D006062 2.6e-31 138.7 103 70.9
Dinv30224 Davidia involucrata HOM05D007544 ORTHO05D006062 1.7e-30 136.0 110 68.2
Pp3c11_5900 Physcomitrium patens HOM05D005145 ORTHO05D006062 5.4e-29 131.0 140 50.7
SMO364G0452 Selaginella moellendorffii HOM05D005145 ORTHO05D006062 5.4e-29 131.0 140 50.0
BcaC01g04827 Brassica carinata HOM05D005145 ORTHO05D006062 9.1e-29 130.2 62 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2788 Anthoceros agrestis HOM05D005145 ORTHO05D006062 2.7e-28 128.6 140 49.3
MELO3C023984.2 Cucumis melo HOM05D005145 ORTHO05D006062 1.3e-27 126.3 66 90.9
Mapoly0068s0080 Marchantia polymorpha HOM05D005145 ORTHO05D006062 1.5e-26 122.9 140 48.6
Dinv00032 Davidia involucrata HOM05D005145 ORTHO05D006062 1.2e-25 119.8 62 91.9
A03p27690 Brassica napus HOM05D005145 ORTHO05D006062 1.1e-21 106.7 51 98.0
TAR369G0045 Trochodendron aralioides HOM05D005145 ORTHO05D006062 1.6e-20 102.8 150 44.0
MD07G1015600 Malus domestica HOM05D005145 ORTHO05D006062 2.0e-20 102.4 111 53.2
CBR_g66761 Chara braunii HOM05D005145 ORTHO05D006062 7.3e-18 94.0 138 39.1
PSO339G1740 Papaver somniferum HOM05D005145 ORTHO05D006062 6.1e-17 90.9 66 66.7
PSO384G2090 Papaver somniferum HOM05D005145 ORTHO05D006062 2.3e-16 89.0 66 65.2
Actinidia28555 Actinidia chinensis HOM05D005145 ORTHO05D006062 4.0e-16 88.2 100 51.0
MD07G1017200 Malus domestica HOM05D005145 ORTHO05D006062 3.7e-14 81.6 99 51.5
SGA_v2.0_scaffold69G23365 Striga asiatica HOM05D005145 ORTHO05D006062 4.1e-13 78.2 99 48.5
Dinv09243 Davidia involucrata HOM05D005145 ORTHO05D006062 1.7e-11 72.8 36 91.7
Dinv22084 Davidia involucrata HOM05D005145 ORTHO05D006062 1.7e-11 72.8 36 91.7
ATR0716G108 Amborella trichopoda HOM05D005145 ORTHO05D006062 5.0e-11 71.2 38 78.9
Dinv18714 Davidia involucrata HOM05D007544 ORTHO05D006062 6.6e-11 70.9 95 47.4
Cre02.g092250 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D006062 3.3e-10 68.6 71 46.5
Dinv09242 Davidia involucrata HOM05D007544 ORTHO05D009682 4.3e-10 68.2 95 45.3
Dinv22085 Davidia involucrata HOM05D007544 ORTHO05D006062 4.3e-10 68.2 95 45.3
MCO12G401 Micromonas commoda HOM05D005145 ORTHO05D006062 4.0e-08 61.6 95 33.7
Dinv11093 Davidia involucrata HOM05D005145 ORTHO05D006062 1.3e-06 56.6 28 89.3
Potri.002G117200 Populus trichocarpa HOM05D000371 ORTHO05D001484 2.2e-06 55.8 136 30.1
Nn8g39174 Nelumbo nucifera HOM05D000371 ORTHO05D001484 2.9e-06 55.5 135 31.1
MBI18_g22302_MAGBIO Magnolia biondii HOM05D018728 ORTHO05D001955 3.7e-06 55.1 29 82.8
SEGI_29388 Sequoiadendron giganteum HOM05D000371 ORTHO05D001484 6.4e-06 54.3 137 31.4
Phvul.001G029000 Phaseolus vulgaris HOM05D000371 ORTHO05D001484 8.3e-06 53.9 136 31.6
Sabra02G0091900 Salix brachista HOM05D000371 ORTHO05D001484 8.3e-06 53.9 136 30.1


User provided reference genes

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